hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-18570996/chunk_1/iprscan-20090618-18570996.nocrc
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Query sequence: sj06448
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF01391.8.ls Collagen triple helix repeat (20 copies) 1113.2 0 18
PF01391.8.fs Collagen triple helix repeat (20 copies) 1087.8 0 18
PF01410.8.fs Fibrillar collagen C-terminal domain 568.8 6.1e-230 1
PF01410.8.ls Fibrillar collagen C-terminal domain 570.7 1.3e-168 1
PF00093.8.fs von Willebrand factor type C domain 88.0 1.2e-24 1
PF08949.1.fs Domain of unknown function (DUF1860) 26.4 3e-09 12
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00093.8.fs 1/1 43 98 .. 1 84 [] 88.0 1.2e-24
PF01391.8.ls 1/18 110 168 .. 1 60 [] 26.8 8.8e-06
PF01391.8.fs 1/18 112 161 .. 1 50 [. 27.3 1.5e-06
PF01391.8.ls 2/18 180 238 .. 1 60 [] 51.4 2.8e-12
PF01391.8.fs 2/18 180 238 .. 1 60 [] 50.4 1.1e-12
PF01391.8.ls 3/18 239 298 .. 1 60 [] 77.7 3.3e-20
PF01391.8.fs 3/18 239 298 .. 1 60 [] 75.7 1.3e-19
PF01391.8.ls 4/18 299 358 .. 1 60 [] 66.9 6e-17
PF01391.8.fs 4/18 299 358 .. 1 60 [] 64.9 1.5e-16
PF01391.8.ls 5/18 359 418 .. 1 60 [] 63.6 5.9e-16
PF01391.8.fs 5/18 359 418 .. 1 60 [] 61.6 1.1e-15
PF01391.8.ls 6/18 419 478 .. 1 60 [] 63.1 8.2e-16
PF01391.8.fs 6/18 419 478 .. 1 60 [] 61.1 1.5e-15
PF01391.8.ls 7/18 479 538 .. 1 60 [] 65.9 1.2e-16
PF01391.8.fs 7/18 479 538 .. 1 60 [] 63.9 2.7e-16
PF01391.8.ls 8/18 539 598 .. 1 60 [] 66.6 7.4e-17
PF01391.8.fs 8/18 539 598 .. 1 60 [] 64.6 1.8e-16
PF01391.8.ls 9/18 599 658 .. 1 60 [] 64.1 4.2e-16
PF01391.8.fs 9/18 599 658 .. 1 60 [] 62.1 8.3e-16
PF01391.8.ls 10/18 659 718 .. 1 60 [] 62.6 1.2e-15
PF01391.8.fs 10/18 659 718 .. 1 60 [] 60.6 2.1e-15
PF01391.8.fs 11/18 719 778 .. 1 60 [] 70.2 5.9e-18
PF01391.8.ls 11/18 719 778 .. 1 60 [] 72.2 1.5e-18
PF01391.8.ls 12/18 782 841 .. 1 60 [] 70.3 5.5e-18
PF01391.8.fs 12/18 782 841 .. 1 60 [] 68.4 1.8e-17
PF01391.8.fs 13/18 842 901 .. 1 60 [] 60.5 2.3e-15
PF01391.8.ls 13/18 842 901 .. 1 60 [] 62.4 1.3e-15
PF01391.8.ls 14/18 902 961 .. 1 60 [] 61.2 3.2e-15
PF01391.8.fs 14/18 902 961 .. 1 60 [] 59.2 5e-15
PF01391.8.ls 15/18 962 1021 .. 1 60 [] 64.6 2.9e-16
PF01391.8.fs 15/18 962 1021 .. 1 60 [] 62.7 6e-16
PF01391.8.ls 16/18 1022 1081 .. 1 60 [] 62.1 1.7e-15
PF01391.8.fs 16/18 1022 1081 .. 1 60 [] 60.1 2.9e-15
PF01391.8.ls 17/18 1082 1141 .. 1 60 [] 75.9 1.2e-19
PF01391.8.fs 17/18 1082 1141 .. 1 60 [] 73.9 4.8e-19
PF01391.8.fs 18/18 1142 1195 .. 1 54 [. 40.5 4.6e-10
PF01391.8.ls 18/18 1142 1201 .. 1 60 [] 35.6 1.6e-07
PF01410.8.fs 1/1 1248 1466 .. 1 226 [] 568.8 6.1e-230
PF01410.8.ls 1/1 1248 1466 .. 1 226 [] 570.7 1.3e-168
Alignments of top-scoring domains:
PF00093.8.fs: domain 1 of 1, from 43 to 98: score 88.0, E = 1.2e-24
*->CvqnGvvYengetWkpdsqPnGvdkCtyiCtCddiedavrlggkvlC
CvqnG +Y+++++Wkp++ C+ iC+Cd+ gkvlC
sj06448 43 CVQNGLRYHDRDVWKPEP-------CR-ICVCDN--------GKVLC 73
dkitCppelLpsldCpnprrvdalvippGECCpewvC<-*
d+++C+++ +Cp + + p+GECCp vC
sj06448 74 DDVICDET----KNCPGA------EVPEGECCP--VC 98
PF01391.8.ls: domain 1 of 18, from 110 to 168: score 26.8, E = 8.8e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G Gp+G++Gp+Gp+Gp+Gp+G G pG pG pGpPGppGppGp
sj06448 110 -TTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGP 155
pGppGapGapGpp<-*
pG G+ +
sj06448 156 PGLGGNFAPQLSY 168
PF01391.8.fs: domain 1 of 18, from 112 to 161: score 27.3, E = 1.5e-06
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G Gp G Gp+Gp+Gp+GppG +G pG pG pG+pGpPGppGppG
sj06448 112 GVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGL 158
pGp<-*
G+
sj06448 159 GGN 161
PF01391.8.ls: domain 2 of 18, from 180 to 238: score 51.4, E = 2.8e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
pGp+Gp Gp+G pGppG+pGp+G++GppG pGepG+ Gp Gp Gp
sj06448 180 -VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 225
pGppGapGapGpp<-*
pGppG+ G+ G++
sj06448 226 PGPPGKNGDDGEA 238
PF01391.8.fs: domain 2 of 18, from 180 to 238: score 50.4, E = 1.1e-12
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
pGp+Gp Gp+G pGppG+pGp+G++GppG pGepG+ Gp Gp Gp
sj06448 180 -VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 225
pGppGapGapGpp<-*
pGppG+ G+ G++
sj06448 226 PGPPGKNGDDGEA 238
PF01391.8.ls: domain 3 of 18, from 239 to 298: score 77.7, E = 3.3e-20
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG+pG++GppGp G++G pG aG pG++G++G++G +G++G +Gp
sj06448 239 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 285
pGppGapGapGpp<-*
+Gp+G+pG+pG++
sj06448 286 AGPKGEPGSPGEN 298
PF01391.8.fs: domain 3 of 18, from 239 to 298: score 75.7, E = 1.3e-19
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG+pG++GppGp G++G pG aG pG++G++G++G +G++G +Gp
sj06448 239 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGP 285
pGppGapGapGpp<-*
+Gp+G+pG+pG++
sj06448 286 AGPKGEPGSPGEN 298
PF01391.8.ls: domain 4 of 18, from 299 to 358: score 66.9, E = 6e-17
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++Gp+G+pG++G+pG+pGpaGa+G+ G+ G++GpPGp Gp+Gp
sj06448 299 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 345
pGppGapGapGpp<-*
pG pGa Ga+G++
sj06448 346 PGFPGAVGAKGEA 358
PF01391.8.fs: domain 4 of 18, from 299 to 358: score 64.9, E = 1.5e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++Gp+G+pG++G+pG+pGpaGa+G+ G+ G++GpPGp Gp+Gp
sj06448 299 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 345
pGppGapGapGpp<-*
pG pGa Ga+G++
sj06448 346 PGFPGAVGAKGEA 358
PF01391.8.ls: domain 5 of 18, from 359 to 418: score 63.6, E = 5.9e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp Gp+G+ Gp+G +G+pGppGpaGa+Gp+G+pG++G+PG++G++G+
sj06448 359 GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 405
pGppGapGapGpp<-*
pG +GapG pG++
sj06448 406 PGIAGAPGFPGAR 418
PF01391.8.fs: domain 5 of 18, from 359 to 418: score 61.6, E = 1.1e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp Gp+G+ Gp+G +G+pGppGpaGa+Gp+G+pG++G+PG++G++G+
sj06448 359 GPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGA 405
pGppGapGapGpp<-*
pG +GapG pG++
sj06448 406 PGIAGAPGFPGAR 418
PF01391.8.ls: domain 6 of 18, from 419 to 478: score 63.1, E = 8.2e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp Gp+Gp GppGp+G++G+pG++G++G+ G++GepGp G +GppGp
sj06448 419 GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 465
pGppGapGapGpp<-*
+G++G+ Ga G+p
sj06448 466 AGEEGKRGARGEP 478
PF01391.8.fs: domain 6 of 18, from 419 to 478: score 61.1, E = 1.5e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp Gp+Gp GppGp+G++G+pG++G++G+ G++GepGp G +GppGp
sj06448 419 GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 465
pGppGapGapGpp<-*
+G++G+ Ga G+p
sj06448 466 AGEEGKRGARGEP 478
PF01391.8.ls: domain 7 of 18, from 479 to 538: score 65.9, E = 1.2e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp G+pGppG++G pG +G+pG++G +Gp+Gp+Ge+G+PGp+Gp G+
sj06448 479 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 525
pGppGapGapGpp<-*
pG++G+pG++G p
sj06448 526 PGEAGRPGEAGLP 538
PF01391.8.fs: domain 7 of 18, from 479 to 538: score 63.9, E = 2.7e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp G+pGppG++G pG +G+pG++G +Gp+Gp+Ge+G+PGp+Gp G+
sj06448 479 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 525
pGppGapGapGpp<-*
pG++G+pG++G p
sj06448 526 PGEAGRPGEAGLP 538
PF01391.8.ls: domain 8 of 18, from 539 to 598: score 66.6, E = 7.4e-17
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G++G+ G+pG pGp+G+ GppGpaG G pGppG+pG+ G++G++G+
sj06448 539 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 585
pGppGapGapGpp<-*
pGp+Ga+G+pG++
sj06448 586 PGPKGAAGEPGKA 598
PF01391.8.fs: domain 8 of 18, from 539 to 598: score 64.6, E = 1.8e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G++G+ G+pG pGp+G+ GppGpaG G pGppG+pG+ G++G++G+
sj06448 539 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 585
pGppGapGapGpp<-*
pGp+Ga+G+pG++
sj06448 586 PGPKGAAGEPGKA 598
PF01391.8.ls: domain 9 of 18, from 599 to 658: score 64.1, E = 4.2e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G++G pGppG+ Gp+G+ G++G++G+pGp+Gp+Ge+G++Gp+G pG+
sj06448 599 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 645
pGppGapGapGpp<-*
+G pG++G+pG++
sj06448 646 QGLPGPAGPPGEA 658
PF01391.8.fs: domain 9 of 18, from 599 to 658: score 62.1, E = 8.3e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G++G pGppG+ Gp+G+ G++G++G+pGp+Gp+Ge+G++Gp+G pG+
sj06448 599 GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 645
pGppGapGapGpp<-*
+G pG++G+pG++
sj06448 646 QGLPGPAGPPGEA 658
PF01391.8.ls: domain 10 of 18, from 659 to 718: score 62.6, E = 1.2e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++G pG+ G+pGp+G+ G++G+pG++G +G+pGp Gp+G++G+
sj06448 659 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 705
pGppGapGapGpp<-*
pG++Ga+G++G+p
sj06448 706 PGNDGAKGDAGAP 718
PF01391.8.fs: domain 10 of 18, from 659 to 718: score 60.6, E = 2.1e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++G pG+ G+pGp+G+ G++G+pG++G +G+pGp Gp+G++G+
sj06448 659 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 705
pGppGapGapGpp<-*
pG++Ga+G++G+p
sj06448 706 PGNDGAKGDAGAP 718
PF01391.8.fs: domain 11 of 18, from 719 to 778: score 70.2, E = 5.9e-18
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++G+pG++G+pG++G++G +G++G++G++G++G++G+pG++G
sj06448 719 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 765
pGppGapGapGpp<-*
+G +G++G+pGp+
sj06448 766 RGLTGPIGPPGPA 778
PF01391.8.ls: domain 11 of 18, from 719 to 778: score 72.2, E = 1.5e-18
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+pG++G+pG++G+pG++G++G +G++G++G++G++G++G+pG++G
sj06448 719 GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGV 765
pGppGapGapGpp<-*
+G +G++G+pGp+
sj06448 766 RGLTGPIGPPGPA 778
PF01391.8.ls: domain 12 of 18, from 782 to 841: score 70.3, E = 5.5e-18
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G +G+ Gp Gp+Gp+G++G+pG++G+pGppGp+G++GpPG++G+pG+
sj06448 782 GDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 828
pGppGapGapGpp<-*
+G+pG +Ga+G +
sj06448 829 KGEPGDAGAKGDA 841
PF01391.8.fs: domain 12 of 18, from 782 to 841: score 68.4, E = 1.8e-17
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G +G+ Gp Gp+Gp+G++G+pG++G+pGppGp+G++GpPG++G+pG+
sj06448 782 GDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA 828
pGppGapGapGpp<-*
+G+pG +Ga+G +
sj06448 829 KGEPGDAGAKGDA 841
PF01391.8.fs: domain 13 of 18, from 842 to 901: score 60.5, E = 2.3e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
GppGp+Gp+GppGp G+ G+pG++Ga+G++GppG+ G+PG++G+ Gp
sj06448 842 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP 888
pGppGapGapGpp<-*
pGp G++G+pGpp
sj06448 889 PGPSGNAGPPGPP 901
PF01391.8.ls: domain 13 of 18, from 842 to 901: score 62.4, E = 1.3e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
GppGp+Gp+GppGp G+ G+pG++Ga+G++GppG+ G+PG++G+ Gp
sj06448 842 GPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP 888
pGppGapGapGpp<-*
pGp G++G+pGpp
sj06448 889 PGPSGNAGPPGPP 901
PF01391.8.ls: domain 14 of 18, from 902 to 961: score 61.2, E = 3.2e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G+ G++Gp+G++Gp+G pG+ G+pGppGp+Ge+G+PG++Gp+G+
sj06448 902 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 948
pGppGapGapGpp<-*
pG pG+ G +G++
sj06448 949 PGTPGPQGIAGQR 961
PF01391.8.fs: domain 14 of 18, from 902 to 961: score 59.2, E = 5e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+G+ G++Gp+G++Gp+G pG+ G+pGppGp+Ge+G+PG++Gp+G+
sj06448 902 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 948
pGppGapGapGpp<-*
pG pG+ G +G++
sj06448 949 PGTPGPQGIAGQR 961
PF01391.8.ls: domain 15 of 18, from 962 to 1021: score 64.6, E = 2.9e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G+pG +G++G pG pGp G++G++Gp G++Ge+GpPGp GppG
sj06448 962 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1008
pGppGapGapGpp<-*
+GppG++G +G+p
sj06448 1009 AGPPGESGREGAP 1021
PF01391.8.fs: domain 15 of 18, from 962 to 1021: score 62.7, E = 6e-16
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G G+pG +G++G pG pGp G++G++Gp G++Ge+GpPGp GppG
sj06448 962 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 1008
pGppGapGapGpp<-*
+GppG++G +G+p
sj06448 1009 AGPPGESGREGAP 1021
PF01391.8.ls: domain 16 of 18, from 1022 to 1081: score 62.1, E = 1.7e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+pG+ G pG++G++G++GpaG+pG pG+pG+pGp Gp+G+ G
sj06448 1022 GAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGD 1068
pGppGapGapGpp<-*
+G++G++G++Gp+
sj06448 1069 RGETGPAGPAGPV 1081
PF01391.8.fs: domain 16 of 18, from 1022 to 1081: score 60.1, E = 2.9e-15
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
G+ G+pG+ G pG++G++G++GpaG+pG pG+pG+pGp Gp+G+ G
sj06448 1022 GAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGD 1068
pGppGapGapGpp<-*
+G++G++G++Gp+
sj06448 1069 RGETGPAGPAGPV 1081
PF01391.8.ls: domain 17 of 18, from 1082 to 1141: score 75.9, E = 1.2e-19
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp G +Gp+Gp+Gp+G++G++G++G +G +G++G++G +GppGppG+
sj06448 1082 GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS 1128
pGppGapGapGpp<-*
pG++G++Ga Gp+
sj06448 1129 PGEQGPSGASGPA 1141
PF01391.8.fs: domain 17 of 18, from 1082 to 1141: score 73.9, E = 4.8e-19
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp G +Gp+Gp+Gp+G++G++G++G +G +G++G++G +GppGppG+
sj06448 1082 GPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGS 1128
pGppGapGapGpp<-*
pG++G++Ga Gp+
sj06448 1129 PGEQGPSGASGPA 1141
PF01391.8.fs: domain 18 of 18, from 1142 to 1195: score 40.5, E = 4.6e-10
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+GppG++G+pG +G G pGp G+pGp+G G++Gp GppGppGp
sj06448 1142 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1188
pGppGap<-*
pGppG+p
sj06448 1189 PGPPGPP 1195
PF01391.8.ls: domain 18 of 18, from 1142 to 1201: score 35.6, E = 1.6e-07
*->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp
Gp+GppG++G+pG +G G pGp G+pGp+G G++Gp GppGppGp
sj06448 1142 GPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1188
pGppGapGapGpp<-*
pGppG+p a
sj06448 1189 PGPPGPPSAGFDF 1201
PF01410.8.fs: domain 1 of 1, from 1248 to 1466: score 568.8, E = 6.1e-230
*->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf
++sPeG srknPARtC+DL++ch+++ksGeYWiDPNqGC++DAikVf
sj06448 1248 IRSPEG-SRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 1293
CnkrfetGvgeTCisptpksvpkRiksWykgks.kdkKhvWFgetmegGf
Cn +etG eTC++pt+ sv++ k+Wy +k++kdk+hvWFge+m++Gf
sj06448 1294 CN--METG--ETCVYPTQPSVAQ--KNWYISKNpKDKRHVWFGESMTDGF 1337
kfsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNl
+f+Y++++++p+++++QlTFLRL+SteAsQNiTYhCKNSvAYmD++tGNl
sj06448 1338 QFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL 1387
kkAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkK
kkAl+l+gSn++E++a+gns+FtY+v+ +DGC+s+tg+wgKTViEy+T+K
sj06448 1388 KKALLLQGSNEIEIRAEGNSRFTYSVT-VDGCTSHTGAWGKTVIEYKTTK 1436
ttRLPIvDiApsDiGgedQeFGveiGPVCF<-*
t+RLPI+D+Ap+D+G +dQeFG+++GPVCF
sj06448 1437 TSRLPIIDVAPLDVGAPDQEFGFDVGPVCF 1466
PF01410.8.ls: domain 1 of 1, from 1248 to 1466: score 570.7, E = 1.3e-168
*->lksPeGksrknPARtCkDLfLchpefksGeYWiDPNqGCikDAikVf
++sPeG srknPARtC+DL++ch+++ksGeYWiDPNqGC++DAikVf
sj06448 1248 IRSPEG-SRKNPARTCRDLKMCHSDWKSGEYWIDPNQGCNLDAIKVF 1293
CnkrfetGvgeTCisptpksvpkRiksWykgks.kdkKhvWFgetmegGf
Cn +etG eTC++pt+ sv++ k+Wy +k++kdk+hvWFge+m++Gf
sj06448 1294 CN--METG--ETCVYPTQPSVAQ--KNWYISKNpKDKRHVWFGESMTDGF 1337
kfsYiddelnpeisnvQlTFLRLLSteAsQNiTYhCKNSvAYmDeatGNl
+f+Y++++++p+++++QlTFLRL+SteAsQNiTYhCKNSvAYmD++tGNl
sj06448 1338 QFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL 1387
kkAlilmgSnDvElsadgnskFtYtvlGeDGCssrtgewgKTViEyeTkK
kkAl+l+gSn++E++a+gns+FtY+v+ +DGC+s+tg+wgKTViEy+T+K
sj06448 1388 KKALLLQGSNEIEIRAEGNSRFTYSVT-VDGCTSHTGAWGKTVIEYKTTK 1436
ttRLPIvDiApsDiGgedQeFGveiGPVCF<-*
t+RLPI+D+Ap+D+G +dQeFG+++GPVCF
sj06448 1437 TSRLPIIDVAPLDVGAPDQEFGFDVGPVCF 1466
//