hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18570996/chunk_1/iprscan-20090618-18570996.nocrc
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Query sequence: sj06448
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00038                                                 569.1   1.6e-166   1
SM00214                                                  83.0    3.7e-20   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00214           1/1      43    98 ..     1    75 []    83.0  3.7e-20
SM00038           1/1    1231  1467 .]     1   240 []   569.1 1.6e-166

Alignments of top-scoring domains:
SM00214: domain 1 of 1, from 43 to 98: score 83.0, E = 3.7e-20
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      Cv+ nG +y d+++Wkp+ pC+iC+C++g kvlCd+v+C +++    
     sj06448    43    CVQ-NGLRYHDRDVWKPE-PCRICVCDNG-KVLCDDVICDETK---- 82   

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                       Cp +       e+p+GeCCp  +C   
     sj06448    83 ---NCPGA-------EVPEGECCP--VC    98   

SM00038: domain 1 of 1, from 1231 to 1467: score 569.1, E = 1.6e-166
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                      d e++ +Lksl++   qIE+++sP+Gs++nPARtC+DLk+cH+++k+
     sj06448  1231    DLEVDTTLKSLSQ---QIENIRSPEGSRKNPARTCRDLKMCHSDWKS 1274 

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgks.k
                   GeYW+DPNqGC  DAikVfCn+et  geTCv+p+ +s++ k+Wy +k++k
     sj06448  1275 GEYWIDPNQGCNLDAIKVFCNMET--GETCVYPTQPSVAQKNWYISKNpK 1322 

                   dkkhvWFgetmngGfkFsYgdsegsp.vgvvQLTFLRLLSteAsQniTYh
                   dk hvWFge+m  Gf+F+Yg+    p + ++QLTFLRL SteAsQniTYh
     sj06448  1323 DKRHVWFGESMTDGFQFEYGGQGSDPaDVAIQLTFLRLMSTEASQNITYH 1372 

                   CKNSvAYmDeatGNlkkAlilrgsnDvElsaegnskftYeVLeDGCqkrt
                   CKNSvAYmD++tGNlkkAl+l+gsn++E++aegns+ftY+V +DGC+++t
     sj06448  1373 CKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHT 1422 

                   gkwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                   g wgKTViEy+T+kt+RLPI+D+AP+D+G++dQeFG+++GPVCF+   
     sj06448  1423 GAWGKTVIEYKTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPVCFL    1467 

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