hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-21244525/chunk_1/iprscan-20080813-21244525.nocrc
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Query sequence: sj06804
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF02469.12.fs Fasciclin domain                              196.2      1e-57   2
PF02469.12.ls Fasciclin domain                              165.7    1.1e-46   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02469.12.fs   1/2      19   140 ..     1   146 []   145.9  7.6e-43
PF02469.12.ls   1/2      19   140 ..     1   146 []   147.7  2.8e-41
PF02469.12.fs   2/2     154   232 ..     1   102 [.    50.3  1.5e-14
PF02469.12.ls   2/2     154   240 ..     1   146 []    17.9  0.00011

Alignments of top-scoring domains:
PF02469.12.fs: domain 1 of 2, from 19 to 140: score 145.9, E = 7.6e-43
                   *->gfstfvallkaagLvdtLndangpGpfTvFAPtneAFaklpppgtld
                       +s   a++ a+gL+++L   +g+G +T++APtneAF+k+ p++tl+
     sj06804    19    LLSSPQAAVAASGLNTML---EGNGQYTLLAPTNEAFEKI-PSETLN 61   

                   aLlkelpenkeqLkniLkyHvvpggvyslkrslssadLkngsnvtttlqG
                   ++l     ++e+L+++L++H++++        ++++ ++ g +v t l+G
     sj06804    62 RILG----DPEALRDLLNNHILKSA-------MCAEAIVAGLSVET-LEG 99   

                   splrvnvsvngggegdvvvndgvnnArvvqaDieatNGViHvIDkVLlP<
                   ++l+v +s  g+    +++n+   +A +   Di atNGViH ID++L+P 
     sj06804   100 TTLEVGCS--GDM---LTING---KAIISNKDILATNGVIHYIDELLIP  140  

                   -*
                     
     sj06804     -    -    

PF02469.12.ls: domain 1 of 2, from 19 to 140: score 147.7, E = 2.8e-41
                   *->gfstfvallkaagLvdtLndangpGpfTvFAPtneAFaklpppgtld
                       +s   a++ a+gL+++L   +g+G +T++APtneAF+k+ p++tl+
     sj06804    19    LLSSPQAAVAASGLNTML---EGNGQYTLLAPTNEAFEKI-PSETLN 61   

                   aLlkelpenkeqLkniLkyHvvpggvyslkrslssadLkngsnvtttlqG
                   ++l     ++e+L+++L++H++++        ++++ ++ g +v t l+G
     sj06804    62 RILG----DPEALRDLLNNHILKSA-------MCAEAIVAGLSVET-LEG 99   

                   splrvnvsvngggegdvvvndgvnnArvvqaDieatNGViHvIDkVLlP<
                   ++l+v +s  g+    +++n+   +A +   Di atNGViH ID++L+P 
     sj06804   100 TTLEVGCS--GDM---LTING---KAIISNKDILATNGVIHYIDELLIP  140  

                   -*
                     
     sj06804     -    -    

PF02469.12.fs: domain 2 of 2, from 154 to 232: score 50.3, E = 1.5e-14
                   *->gfstfvallkaagLvdtLndangpGpfTvFAPtneAF.aklpppgtl
                      + st ++l ++agL + L   +g++++T++AP n  F++  pp +  
     sj06804   154    DVSTAIDLFRQAGLGNHL---SGSERLTLLAPLNSVFkDGTPPID-- 195  

                   daLlkelpenkeqLkniLkyHvvpggvyslkrslssadLkngsnvtttlq
                              +  +n+L++H+++++       l s+ L++g+++ t l+
     sj06804   196 -----------AHTRNLLRNHIIKDQ-------LASKYLYHGQTLET-LG 226  

                   Gsplrv<-*
                   G++lrv   
     sj06804   227 GKKLRV    232  

PF02469.12.ls: domain 2 of 2, from 154 to 240: score 17.9, E = 0.00011
                   *->gfstfvallkaagLvdtLndangpGpfTvFAPtneAF.aklpppgtl
                      + st ++l ++agL + L   +g++++T++AP n  F++  pp +  
     sj06804   154    DVSTAIDLFRQAGLGNHL---SGSERLTLLAPLNSVFkDGTPPID-- 195  

                   daLlkelpenkeqLkniLkyHvvpggvyslkrslssadLkngsnvtttlq
                              +  +n+L++H+++++       l s+ L++g+++ t l+
     sj06804   196 -----------AHTRNLLRNHIIKDQ-------LASKYLYHGQTLET-LG 226  

                   GsplrvnvsvngggegdvvvndgvnnArvvqaDieatNGViHvIDkVLlP
                   G++lrv v++n ++                                    
     sj06804   227 GKKLRVFVYRNVSS------------------------------------ 240  

                   <-*
                      
     sj06804     -     -    

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