hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-21244525/chunk_1/iprscan-20080813-21244525.nocrc
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Query sequence: sj06804
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00554                                                 147.0      2e-39   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00554    1/2      43   141 ..     1   122 []   128.1  9.6e-34
SM00554    2/2     178   241 ..     1   122 []    18.9    0.082

Alignments of top-scoring domains:
SM00554: domain 1 of 2, from 43 to 141: score 128.1, E = 9.6e-34
                   *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly
                      T++aPt+eAF+k+p++tl       n++l dp      ++L+ lL++
     sj06804    43    TLLAPTNEAFEKIPSETL-------NRILGDP------EALRDLLNN 76   

                   HvvpgrltsadllnggtlpTlaGsklrvnvsggtvtvNgaagdsktgavt
                   H+++++ +++++  g  ++Tl+G +l+v +sg+++t+Ng           
     sj06804    77 HILKSAMCAEAIVAGLSVETLEGTTLEVGCSGDMLTINGK---------- 116  

                   arvvea.DiaatNGvvHvIDrVLlPp<-*
                    ++++ +Di atNGv+H ID++L+P    
     sj06804   117 -AIISNkDILATNGVIHYIDELLIPD    141  

SM00554: domain 2 of 2, from 178 to 241: score 18.9, E = 0.082
                   *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly
                      T++aP ++ Fk+ +p            ++++          ++lL++
     sj06804   178    TLLAPLNSVFKDGTP-----------PIDAHT---------RNLLRN 204  

                   HvvpgrltsadllnggtlpTlaGsklrvnvsggtvtvNgaagdsktgavt
                   H+++++l s+ l++g+tl+Tl+G klrv+v++                  
     sj06804   205 HIIKDQLASKYLYHGQTLETLGGKKLRVFVYR------------------ 236  

                   arvveaDiaatNGvvHvIDrVLlPp<-*
                     v ++                      
     sj06804   237 -NVSSG-------------------    241  

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