hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-21302913/chunk_1/iprscan-20080813-21302913.nocrc
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Query sequence: sj07517
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02841.5.fs Guanylate-binding protein, C-terminal domain   362.3   7.1e-106   1
PF02841.5.ls Guanylate-binding protein, C-terminal domain   210.6    3.4e-60   1
PF02263.9.fs Guanylate-binding protein, N-terminal domain   120.8    2.5e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02263.9.fs   1/1      20    96 ..   211   289 .]   120.8  2.5e-34
PF02841.5.fs   1/1      98   270 ..     1   175 [.   362.3 7.1e-106
PF02841.5.ls   1/1      98   281 ..     1   305 []   210.6  3.4e-60

Alignments of top-scoring domains:
PF02263.9.fs: domain 1 of 1, from 20 to 96: score 120.8, E = 2.5e-34
                   *->LklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPglkkkllpqle
                      L +  g++++ +++N++R+cIrkfFpk+kCFvfdrP++++kl +qle
     sj07517    20    LNVFLGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKL-AQLE 65   

                   elredeLdpeFkeqldafcsyifspeskvktl<-*
                   +l+++eLdpeF++q+++fcsyifs +sk+ktl   
     sj07517    66 KLQDEELDPEFVQQVADFCSYIFS-NSKTKTL    96   

PF02841.5.fs: domain 1 of 1, from 98 to 270: score 362.3, E = 7.1e-106
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      GGi+V+GprL++LV tYvnAI+SG++PC+e+av++LAQiENsaAVqk
     sj07517    98    GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQK 144  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   AiahYe+qM+Q+++LPTe+lQeLLd+Hrd+E+EA++vF  +SFk  Dv++
     sj07517   145 AIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK--DVDH 192  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                    Fq++L aqLe++++ Fc++N+eaSs+rC+alL+ ++ +Lee++k G +s
     sj07517   193 LFQKELAAQLEKKRDHFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYS 242  

                   vpGGhrLfleavqeieakYkQvPrKGvk<-*
                   +pGG+rLf +++q +++kY+  PrKG++   
     sj07517   243 KPGGYRLFVQKLQDLKKKYYEEPRKGIQ    270  

PF02841.5.ls: domain 1 of 1, from 98 to 281: score 210.6, E = 3.4e-60
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      GGi+V+GprL++LV tYvnAI+SG++PC+e+av++LAQiENsaAVqk
     sj07517    98    GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQK 144  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   AiahYe+qM+Q+++LPTe+lQeLLd+Hrd+E+EA++vF  +SFk  Dv++
     sj07517   145 AIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK--DVDH 192  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                    Fq++L aqLe++++ Fc++N+eaSs+rC+alL+ ++ +Lee++k G +s
     sj07517   193 LFQKELAAQLEKKRDHFCKQNQEASSDRCSALLQVIFSPLEEEVKAGIYS 242  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   +pGG+rLf +++q +++kY+  PrKG++   v k +L             
     sj07517   243 KPGGYRLFVQKLQDLKKKYYEEPRKGIQ---VTKIYLS------------ 277  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                                                                     
     sj07517   278 -------------------I------------------------------ 278  

                   syqEhkkqLtekmEserkqlmaEqnrmLEhklkeqeeLleeGFknestll
                               mEs                                   
     sj07517   279 ------------MES----------------------------------- 281  

                   ekeIselr<-*
                              
     sj07517     - --------    -    

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