hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-21355182/chunk_1/iprscan-20080813-21355182.nocrc
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Query sequence: sj07931
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03166.5.ls MH2 domain                                     341.3    1.5e-99   1
PF03166.5.fs MH2 domain                                     339.5    5.1e-99   1
PF03165.7.ls MH1 domain                                     163.3    5.8e-46   1
PF03165.7.fs MH1 domain                                     161.5    8.4e-46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03165.7.fs   1/1     269   382 ..     1   120 []   161.5  8.4e-46
PF03165.7.ls   1/1     269   382 ..     1   120 []   163.3  5.8e-46
PF03166.5.fs   1/1     435   606 .]     1   228 []   339.5  5.1e-99
PF03166.5.ls   1/1     435   606 .]     1   228 []   341.3  1.5e-99

Alignments of top-scoring domains:
PF03165.7.fs: domain 1 of 1, from 269 to 382: score 161.5, E = 8.4e-46
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      e+ l++ ++s+lKKLK+++  le LlqAVeSrG+++ t C+++p  +
     sj07931   269    EADLKALTHSVLKKLKERQ--LELLLQAVESRGGTR-TACLLLP-GR 311  

                   LdGRLqv.........n.aqrkglPHviyCLRqadRlwRWPDLqsqnELK
                   Ld+RL+++ + + ++ ++++ ++lP +++C     +++RWPDL++++E+K
     sj07931   312 LDCRLGPgapagaqpaQpPSSYSLP-LLLC-----KVFRWPDLRHSSEVK 355  

                   aiptCeyagfeskkdeaCnPyvCiNPYHysRve<-*
                   ++++Ce++ ++++++      vC+NP+H+sR++   
     sj07931   356 RLCCCESY-GKINPEL-----VCCNPHHLSRLC    382  

PF03165.7.ls: domain 1 of 1, from 269 to 382: score 163.3, E = 5.8e-46
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      e+ l++ ++s+lKKLK+++  le LlqAVeSrG+++ t C+++p  +
     sj07931   269    EADLKALTHSVLKKLKERQ--LELLLQAVESRGGTR-TACLLLP-GR 311  

                   LdGRLqv.........n.aqrkglPHviyCLRqadRlwRWPDLqsqnELK
                   Ld+RL+++ + + ++ ++++ ++lP +++C     +++RWPDL++++E+K
     sj07931   312 LDCRLGPgapagaqpaQpPSSYSLP-LLLC-----KVFRWPDLRHSSEVK 355  

                   aiptCeyagfeskkdeaCnPyvCiNPYHysRve<-*
                   ++++Ce++ ++++++      vC+NP+H+sR++   
     sj07931   356 RLCCCESY-GKINPEL-----VCCNPHHLSRLC    382  

PF03166.5.fs: domain 1 of 1, from 435 to 606: score 339.5, E = 5.1e-99
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      ++++++Wc++aY+E++trVG++++v+++   s+ ++++    D++  
     sj07931   435    PGDRSHWCVVAYWEEKTRVGRLYCVQEP---SL-DIFY----DLP-- 471  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   ++++fCLGqL+++n+  s++++k+R++IG+G++L++++dG   VwvyNrS
     sj07931   472 QGNGFCLGQLNSDNK--SQLVQKVRSKIGCGIQLTREVDG---VWVYNRS 516  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ++pIF++S++Ld+p++  r+l  VhKv+Pg+s+K+Fd++k+y+l+r+++ 
     sj07931   517 SYPIFIKSATLDNPDS--RTL-LVHKVFPGFSIKAFDYEKAYSLQRPND- 562  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                                                       +e+++++++++t++
     sj07931   563 ------------------------------------HEFMQQPWTGFTVQ 576  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   iSFVKGWG++Y +RQ+I+s+PCW+Ev++n++   
     sj07931   577 ISFVKGWGQCY-TRQFISSCPCWLEVIFNSR    606  

PF03166.5.ls: domain 1 of 1, from 435 to 606: score 341.3, E = 1.5e-99
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      ++++++Wc++aY+E++trVG++++v+++   s+ ++++    D++  
     sj07931   435    PGDRSHWCVVAYWEEKTRVGRLYCVQEP---SL-DIFY----DLP-- 471  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   ++++fCLGqL+++n+  s++++k+R++IG+G++L++++dG   VwvyNrS
     sj07931   472 QGNGFCLGQLNSDNK--SQLVQKVRSKIGCGIQLTREVDG---VWVYNRS 516  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ++pIF++S++Ld+p++  r+l  VhKv+Pg+s+K+Fd++k+y+l+r+++ 
     sj07931   517 SYPIFIKSATLDNPDS--RTL-LVHKVFPGFSIKAFDYEKAYSLQRPND- 562  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                                                       +e+++++++++t++
     sj07931   563 ------------------------------------HEFMQQPWTGFTVQ 576  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   iSFVKGWG++Y +RQ+I+s+PCW+Ev++n++   
     sj07931   577 ISFVKGWGQCY-TRQFISSCPCWLEVIFNSR    606  

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