hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-21355182/chunk_1/iprscan-20080813-21355182.nocrc
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Query sequence: sj07931
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00524                                                 290.0    1.7e-82   1
SM00523                                                 186.3    2.9e-51   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00523     1/1     267   385 ..     1   124 []   186.3  2.9e-51
SM00524     1/1     439   604 ..     1   212 []   290.0  1.7e-82

Alignments of top-scoring domains:
SM00523: domain 1 of 1, from 267 to 385: score 186.3, E = 2.9e-51
                   *->eeekwakkavesLvKkLKkkNkqqLeeLlqAVeSkgkpptrCvtipr
                      + e+++k++++s++KkLK++   qLe LlqAVeS+g+++t+C+++p+
     sj07931   267    GAEADLKALTHSVLKKLKER---QLELLLQAVESRGGTRTACLLLPG 310  

                   eRslDgRlqvsdpl.....QadrkglPhVlycRLfRWPDLqsddkhELKa
                     +lD+Rl+  +p++ ++ Q+   +++++l+c++fRWPDL++  ++E+K+
     sj07931   311 --RLDCRLGPGAPAgaqpaQPPSSYSLPLLLCKVFRWPDLRH--SSEVKR 356  

                   lptCqyafesksnpegevCcNPYHYsrverpe<-*
                   l++C++++  k npe  vCcNP+H+sr+++ e   
     sj07931   357 LCCCESYG--KINPE-LVCCNPHHLSRLCELE    385  

SM00524: domain 1 of 1, from 439 to 604: score 290.0, E = 1.7e-82
                   *->esWcsIaYyElntRVGetfkvsspdphtvtVDGftdpssdgsrfcLG
                      ++Wc +aY+E++tRVG++++v++     ++ D+f+d+ ++g++fcLG
     sj07931   439    SHWCVVAYWEEKTRVGRLYCVQE-----PSLDIFYDL-PQGNGFCLG 479  

                   qlsNvnRneaiekiRkhIGkGvqLsyendqGdVwiynrsdspIFVqSptl
                   ql+++n+++ ++k+R++IG G+qL+ e   ++Vw+ynrs +pIF++S tl
     sj07931   480 QLNSDNKSQLVQKVRSKIGCGIQLTREV--DGVWVYNRSSYPIFIKSATL 527  

                   depsgrplsdtVhKlpPgysqKalKvFDmrkfaqqmrdaalsaqaAaaaq
                   d+p++r+l   VhK++Pg+s   +K+FD++k+++++r             
     sj07931   528 DNPDSRTL--LVHKVFPGFS---IKAFDYEKAYSLQRP------------ 560  

                   aAavaGmapyigekllerelakgaegvydlrrmCtiRiSFVKGWGedYsR
                                     + +++++++++ +   t++iSFVKGWG++Y+R
     sj07931   561 ------------------NDHEFMQQPWTGF---TVQISFVKGWGQCYTR 589  

                   qditstPCWiEvhLn<-*
                   q+i s+PCW+Ev++n   
     sj07931   590 QFISSCPCWLEVIFN    604  

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