hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-19032812/chunk_1/iprscan-20090618-19032812.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj08759 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00053.14.ls Laminin EGF-like (Domains III and V) 331.6 1.2e-96 6 PF00053.14.fs Laminin EGF-like (Domains III and V) 321.4 1.4e-93 6 PF00055.8.fs Laminin N-terminal (Domain VI) 160.3 1.5e-48 2 PF00055.8.ls Laminin N-terminal (Domain VI) 141.4 2.2e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00055.8.fs 1/2 71 220 .. 1 177 [. 153.6 1.6e-46 PF00055.8.ls 1/1 71 293 .. 1 264 [] 141.4 2.2e-39 PF00053.14.fs 1/6 295 358 .. 1 59 [] 38.6 1.5e-10 PF00053.14.ls 1/6 295 358 .. 1 59 [] 40.5 5.2e-09 PF00053.14.fs 2/6 361 412 .. 1 52 [. 57.1 6.7e-16 PF00053.14.ls 2/6 361 421 .. 1 59 [] 58.2 2.5e-14 PF00053.14.fs 3/6 424 473 .. 1 59 [] 70.9 6.6e-20 PF00053.14.ls 3/6 424 473 .. 1 59 [] 72.8 1e-18 PF00053.14.ls 4/6 476 523 .. 1 59 [] 70.0 7.2e-18 PF00053.14.fs 4/6 476 523 .. 1 59 [] 68.2 4.2e-19 PF00053.14.ls 5/6 526 576 .. 1 59 [] 42.4 1.4e-09 PF00053.14.fs 5/6 526 576 .. 1 59 [] 40.6 4e-11 PF00053.14.ls 6/6 579 623 .. 1 59 [] 47.7 3.6e-11 PF00053.14.fs 6/6 579 623 .. 1 59 [] 46.0 1.2e-12 Alignments of top-scoring domains: PF00055.8.fs: domain 1 of 2, from 71 to 220: score 153.6, E = 1.6e-46 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC CyP +g+L+++r+ l a+sTCGl +PE yC + + + kC sj08759 71 CYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQ------MKC 111 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn CDs++p+ n sH+ +++ + p r WWQS+ n v n sj08759 112 CKCDSRQPH----NYYSHRVENVASSSGPMR---WWQSQ---NDV---NP 148 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay V ++LDL F+ v + F+ + P a m+ieRSsDfGktW++YqY a+ sj08759 149 VSLQLDLDRRFQLQEVMMEFQ-GPMP-AGMLIERSSDFGKTWRVYQYLAA 196 dDsECeatYpgiprrpirtgraeddvlCTS<-* d C +t+p + + + ++dv C S sj08759 197 D---CTSTFPRVRQGRPQS---WQDVRCQS 220 PF00055.8.ls: domain 1 of 1, from 71 to 293: score 141.4, E = 2.2e-39 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC CyP +g+L+++r+ l a+sTCGl +PE yC + + + kC sj08759 71 CYPPVGDLLVGRTRFLRASSTCGLTKPETYCTQYGEWQ------MKC 111 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn CDs++p+ n sH+ +++ + p r WWQS+ n v n sj08759 112 CKCDSRQPH----NYYSHRVENVASSSGPMR---WWQSQ---NDV---NP 148 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay V ++LDL F+ v + F+ + P a m+ieRSsDfGktW++YqY a+ sj08759 149 VSLQLDLDRRFQLQEVMMEFQ-GPMP-AGMLIERSSDFGKTWRVYQYLAA 196 dDsECeatYpgiprrpirtgraeddvlCTSrYSdieP......lteGEVi d C +t+p + + + ++dv C S P++++ +l +G V sj08759 197 D---CTSTFPRVRQGRPQS---WQDVRCQS-----LPqrpnarLNGGKVQ 235 FsvLe...GRPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsS +++ +G P+ + S ++Qe +Tn+R+++tRL + + sj08759 236 LNLMDlvsGIPATQ-----SQKIQEVGEITNLRVNFTRL----APVPQ-- 274 HRelkeLdpevlekYYYAIsDivVGG<-* + + YYA+s + G sj08759 275 -------RGYHPPSAYYAVSQLRLQG 293 PF00053.14.fs: domain 1 of 6, from 295 to 358: score 38.6, E = 1.5e-10 *->CdCnphGslsddtCdsddelf......geetGqClkCkpnvtGrrCd C C++h+ d+C + ++ + ++++ ++ +C+ C++n++G++C+ sj08759 295 CFCHGHA----DRCAPKPGASagpstaVQVHDVCV-CQHNTAGPNCE 336 rCkpGyyglpsg.....dpgqgC<-* rC+p y ++p+++ +++d + C sj08759 337 RCAPFYNNRPWRpaegqDAH-EC 358 PF00053.14.ls: domain 1 of 6, from 295 to 358: score 40.5, E = 5.2e-09 *->CdCnphGslsddtCdsddelf......geetGqClkCkpnvtGrrCd C C++h+ d+C + ++ + ++++ ++ +C+ C++n++G++C+ sj08759 295 CFCHGHA----DRCAPKPGASagpstaVQVHDVCV-CQHNTAGPNCE 336 rCkpGyyglpsg.....dpgqgC<-* rC+p y ++p+++ +++d + C sj08759 337 RCAPFYNNRPWRpaegqDAH-EC 358 PF00053.14.fs: domain 2 of 6, from 361 to 412: score 57.1, E = 6.7e-16 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC CdCn+h+ +tC++d+++f ++g +G+C++C+++++G++C+rC sj08759 361 CDCNGHS----ETCHFDPAVFaasqGAYGGVCDNCRDHTEGKNCERC 403 kpGyyglps<-* + y+++++ sj08759 404 QLHYFRNRR 412 PF00053.14.ls: domain 2 of 6, from 361 to 421: score 58.2, E = 2.5e-14 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC CdCn+h+ +tC++d+++f ++g +G+C++C+++++G++C+rC sj08759 361 CDCNGHS----ETCHFDPAVFaasqGAYGGVCDNCRDHTEGKNCERC 403 kpGyyglpsg..dpgqgC<-* + y+++++ + + + C sj08759 404 QLHYFRNRRPgaSIQETC 421 PF00053.14.fs: domain 3 of 6, from 424 to 473: score 70.9, E = 6.6e-20 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p G+++++ Cd+ +tGqC+ Ck++v+G+rCd CkpG+ sj08759 424 CECDPDGAVPGAPCDP-------VTGQCV-CKEHVQGERCDLCKPGF 462 yglpsgdpgqgC<-* gl ++qgC sj08759 463 TGLTY-ANPQGC 473 PF00053.14.ls: domain 3 of 6, from 424 to 473: score 72.8, E = 1e-18 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p G+++++ Cd+ +tGqC+ Ck++v+G+rCd CkpG+ sj08759 424 CECDPDGAVPGAPCDP-------VTGQCV-CKEHVQGERCDLCKPGF 462 yglpsgdpgqgC<-* gl ++qgC sj08759 463 TGLTY-ANPQGC 473 PF00053.14.ls: domain 4 of 6, from 476 to 523: score 70.0, E = 7.2e-18 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdCn +Gs d Cd e+G+Cl C+pnv G++Cd+C+p + sj08759 476 CDCNILGSRRDMPCDE-------ESGRCL-CLPNVVGPKCDQCAPYH 514 yglpsgdpgqgC<-* + l +gqgC sj08759 515 WKL---ASGQGC 523 PF00053.14.fs: domain 4 of 6, from 476 to 523: score 68.2, E = 4.2e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdCn +Gs d Cd e+G+Cl C+pnv G++Cd+C+p + sj08759 476 CDCNILGSRRDMPCDE-------ESGRCL-CLPNVVGPKCDQCAPYH 514 yglpsgdpgqgC<-* + l +gqgC sj08759 515 WKL---ASGQGC 523 PF00053.14.ls: domain 5 of 6, from 526 to 576: score 42.4, E = 1.4e-09 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.....r C+C+ph sls ++C++ +tGqC+ C+++++G C ++ sj08759 526 CACDPHNSLS-PQCNQ-------FTGQCP-CREGFGGLMCSaaairQ 563 CkpGyyglpsgdpgqgC<-* C + +yg+ gC sj08759 564 CPDRTYGD---VAT-GC 576 PF00053.14.fs: domain 5 of 6, from 526 to 576: score 40.6, E = 4e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCd.....r C+C+ph sls ++C++ +tGqC+ C+++++G C ++ sj08759 526 CACDPHNSLS-PQCNQ-------FTGQCP-CREGFGGLMCSaaairQ 563 CkpGyyglpsgdpgqgC<-* C + +yg+ gC sj08759 564 CPDRTYGD---VAT-GC 576 PF00053.14.ls: domain 6 of 6, from 579 to 623: score 47.7, E = 3.6e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+ +G+ + + Cd +G+Cl C+p+ tG+rCd+C+ Gy sj08759 579 CDCDFRGTEG-PGCDK-------ASGRCL-CRPGLTGPRCDQCQRGY 616 yglpsgdpgqgC<-* + + C sj08759 617 CN----RYP-VC 623 PF00053.14.fs: domain 6 of 6, from 579 to 623: score 46.0, E = 1.2e-12 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+ +G+ + + Cd +G+Cl C+p+ tG+rCd+C+ Gy sj08759 579 CDCDFRGTEG-PGCDK-------ASGRCL-CRPGLTGPRCDQCQRGY 616 yglpsgdpgqgC<-* + + C sj08759 617 CN----RYP-VC 623 //