hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-19032812/chunk_1/iprscan-20090618-19032812.nocrc
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Query sequence: sj08759
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00136                                                 385.1   4.1e-111   1
SM00180                                                 303.8    1.2e-86   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00136    1/1      65   293 ..     1   282 []   385.1 4.1e-111
SM00180    1/6     295   358 ..     1    42 []    41.3  1.3e-07
SM00180    2/6     361   421 ..     1    42 []    47.4  1.9e-09
SM00180    3/6     424   473 ..     1    42 []    63.9    2e-14
SM00180    4/6     476   523 ..     1    42 []    64.0  1.9e-14
SM00180    5/6     526   576 ..     1    42 []    40.7    2e-07
SM00180    6/6     579   623 ..     1    42 []    46.6  3.3e-09

Alignments of top-scoring domains:
SM00136: domain 1 of 1, from 65 to 293: score 385.1, E = 4.1e-111
                   *->agrprrCyPefvNlAfgRkrpvtAtsTCGeqkrprPErYCklvghta
                      a+++++CyP++++l++gR+r+++A+sTCG++    PE+YC+++g   
     sj08759    65    ACSRGACYPPVGDLLVGRTRFLRASSTCGLT---KPETYCTQYG--- 105  

                   etdliWsllekprteqgkkCdlCDarqptkedprrsHpasnltDlnnpnn
                                 e+++kC++CD+rqp   ++++sH+++n++++++p  
     sj08759   106 --------------EWQMKCCKCDSRQP---HNYYSHRVENVASSSGP-- 136  

                   ptWWQSeplsnGpqynnVnLTLdLgkeFevtYVilkFcPNSPRPeslail
                   ++WWQS++++n     +V+L+LdL+++F++++V+++F+  +P+P + +++
     sj08759   137 MRWWQSQNDVN-----PVSLQLDLDRRFQLQEVMMEFQ--GPMP-AGMLI 178  

                   erStDfGkTWqPwQyySsqdaeCrrtFGrpprgaitkggneqeviCtsey
                   erS+DfGkTW+++Qy +++   C++tF+r+++g++++   +q+v+C+s +
     sj08759   179 ERSSDFGKTWRVYQYLAAD---CTSTFPRVRQGRPQS---WQDVRCQSLP 222  

                   sdis.PlegGeiafslLegRPsaedfdnSpvLQewvtATdiRvrltRLnt
                   ++++ +l+gG+++++l++ +++++ +++S+++Qe++++T++Rv++tRL++
     sj08759   223 QRPNaRLNGGKVQLNLMDLVSGIP-ATQSQKIQEVGEITNLRVNFTRLAP 271  

                   plgddlmdvnskeleerDpevtrrYyYaIsDlaVGG<-*
                    ++++ ++             ++++yYa+s+l+++G   
     sj08759   272 -VPQRGYH-------------PPSAYYAVSQLRLQG    293  

SM00180: domain 1 of 6, from 295 to 358: score 41.3, E = 1.3e-07
                   *->CdCnlpppvG....Cdp..............tGqClnCkpnttGGrr
                      C C+     G+ ++C p+++ + ++++  + + +C+ C++nt+G ++
     sj08759   295    CFCH-----GhadrCAPkpgasagpstavqvHDVCV-CQHNTAG-PN 334  

                   CdderCapGyy.............gC<-*
                   C+  rCap y++++ ++ ++++ ++C   
     sj08759   335 CE--RCAPFYNnrpwrpaegqdahEC    358  

SM00180: domain 2 of 6, from 361 to 421: score 47.4, E = 1.9e-09
                   *->CdCnlpppvG....Cdp............tGqClnCkpnttGGrrCd
                      CdCn     G++++C++++     +++  +G+C+nC+++t+G  +C+
     sj08759   361    CDCN-----GhsetCHFdpavfaasqgayGGVCDNCRDHTEG-KNCE 401  

                   derCapGyy...........gC<-*
                     rC+ +y+++++++ + +++C   
     sj08759   402 --RCQLHYFrnrrpgasiqeTC    421  

SM00180: domain 3 of 6, from 424 to 473: score 63.9, E = 2e-14
                   *->CdCnlpppvG......Cdp.tGqClnCkpnttGGrrCdderCapGyy
                      C+C+   p+G  ++ +Cdp tGqC+ Ck++++G +rCd   C+pG+ 
     sj08759   424    CECD---PDGavpgapCDPvTGQCV-CKEHVQG-ERCD--LCKPGFT 463  

                   ........gC<-*
                   + +  +++gC   
     sj08759   464 gltyanpqGC    473  

SM00180: domain 4 of 6, from 476 to 523: score 64.0, E = 1.9e-14
                   *->CdCnlpppvG......Cdp.tGqClnCkpnttGGrrCdderCapGyy
                      CdCn     G++++ +Cd ++G+Cl C pn++G ++Cd  +Cap ++
     sj08759   476    CDCN---ILGsrrdmpCDEeSGRCL-CLPNVVG-PKCD--QCAPYHW 515  

                   ......gC<-*
                   +  +++gC   
     sj08759   516 klasgqGC    523  

SM00180: domain 5 of 6, from 526 to 576: score 40.7, E = 2e-07
                   *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdde...rCapG
                      C C+   p+++ +++C++ tGqC+ C+++ +GG  C ++  ++C + 
     sj08759   526    CACD---PHNslspqCNQfTGQCP-CREG-FGGLMCSAAairQCPDR 567  

                   yy.....gC<-*
                    y++  +gC   
     sj08759   568 TYgdvatGC    576  

SM00180: domain 6 of 6, from 579 to 623: score 46.6, E = 3.3e-09
                   *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy.
                      CdC+    +G+++++Cd+ +G+Cl C+p+ tG +rCd  +C+ Gy +
     sj08759   579    CDCD---FRGtegpgCDKaSGRCL-CRPGLTG-PRCD--QCQRGYCn 618  

                   ...gC<-*
                   + + C   
     sj08759   619 rypVC    623  

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