hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-22014577/chunk_1/iprscan-20080813-22014577.nocrc
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Query sequence: sj08895y2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF08393.3.ls Dynein heavy chain, N-terminal region 2    -35.5    5.5e-10   1
PF03028.6.fs Dynein heavy chain                          22.4    3.6e-07   2
PF03028.6.ls Dynein heavy chain                        -268.4    1.8e-06   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF08393.3.ls   1/1      90   555 ..     1   427 []   -35.5  5.5e-10
PF03028.6.ls   1/1    3060  3838 ..     1   783 []  -268.4  1.8e-06
PF03028.6.fs   2/2    3230  3251 ..   184   205 ..    13.2  0.00022

Alignments of top-scoring domains:
PF08393.3.ls: domain 1 of 1, from 90 to 555: score -35.5, E = 5.5e-10
                   *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee
                      p        +   + +W ly  + e+i+ewk + + ++  p   +e 
   sj08895y2    90    PLPICGTRPIVQQQRIWHLYRVISENISEWKCMAFAKF-SPAMAQEK 135  

                   ldkllkqlrkLpkev.rqyeakeafeklkqkiknfkkslpllqeLknpam
                   ++ +l+++++++++++ +++   + ++    + +f+++lpll+ L + + 
   sj08895y2   136 TEGWLTEAARMSTTLeLHSP---VLQHCMRILGEFRSYLPLLTKLGSLHP 182  

                   keRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIv
                        + L ++lg          ++e ltLg+ll  +L l++++ i+++ 
   sj08895y2   183 QSLNCQCLLRALGLG-SL----QTIELLTLGQLLTYPL-LEFADRINQVW 226  

                   dqAqkElaiEkaLkeiketWsn............................
                      +      + ++++  +W +++ +  +   + + +++ +++++++  +
   sj08895y2   227 QNENERIHAQETIRRLQRYWEArqlrllnfilhvpyeppaserskrqvlr 276  

                   .veFelvpYkdtgrckllkGgwdelfekLeDnqvlLqsMkaSpyykpFed
                   +   e+v+ kd+g +++l+ + + l++ + +++  L+ ++a        +
   sj08895y2   277 sPQWEVVD-KDSG-TFILS-DYSNLQDSIQESLQVLSKILAIEKSGDLNK 323  

                   eiseWekKLslldeileiWleVQrkWvYLEgIFigSeDIrkQLPe..Eak
                    ++eW   +  l ++le+Wl+ Q+kW+ L  +     + + Q P+ +  +
   sj08895y2   324 IALEWVAIMHGLGALLEVWLTFQQKWIFLNKVL---HEMKIQFPNadLNS 370  

                   RFdnIDkeflkiMkkvakdpnVldv..........cnipglleslLerln
                   RF+  D +++ +M+   +dp Vl++  ++ ++++  + ++l+   L+  +
   sj08895y2   371 RFKVMDDQYRTLMRISVADPMVLSLvvpsaerspyFQGQQLQQL-LQAGS 419  

                   eqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskdPtrvQkHL.
                     Le +  +L+  L    + FPR +FlSD +L  +L++    +++   L 
   sj08895y2   420 VELEGIIMSLESVLYGVCAHFPRLFFLSDSELVALLAA--RLESCEAQLw 467  

                   .kKlFdgIasLefdedgkd.................ktIvgmvSkEGEeV
                    + +F+ ++ + f + + ++++++++ +++++++++ +++++    GEeV
   sj08895y2   468 vRRCFPHVHAVSF-RSCPTgekntddwesspntqtqVEALAVLGAGGEEV 516  

                   pfsnpvsiegappVEeWLneLedeMkaTLkellreaveayr<-*
                   ++  p  + +     +WL +Le+  ++ L + l  +v+a     
   sj08895y2   517 KLQGPLPLHP--DLPKWLASLEKCLRLALVHMLQGCVAARL    555  

PF03028.6.ls: domain 1 of 1, from 3060 to 3838: score -268.4, E = 1.8e-06
                   *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk
                        +++++p+  wl +++W ++  L+ l+ F gL   l++++   +W+
   sj08895y2  3060    PVSDVARPA--WLGPKAWHECEMLELLPPFVGLCASLAGHS--SAWQ 3102 

                   kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty
                     +  +++    + P+   +          +s +qKL+l R lRP+ l  
   sj08895y2  3103 AYLSLSST-VLGPAPGPGPE---------PLSLLQKLILWRVLRPECLAG 3142 

                   alrnFveekLpGekfvepdppldlskiyekeSspstPilFiL......SP
                   al++F  + L G++  ++  ++  +  ++  S ++ P+l  L++++++S 
   sj08895y2  3143 ALADFTTSLL-GRP-LDE-NTYAPTMPFK-HSQATQPMLILLpppghpSA 3188 

                   GaDPskdvekLAkkmGFtfdnGkklhSiSLGQ.GQgpniA..ekaIetAa
                      P+  + kLA k +   +++k+l+ i+LG+++ +p +      + +A 
   sj08895y2  3189 TLHPLTVIQKLAAKYQ---QGQKQLQVIALGSeAWDP-VSvvVSTLSQAM 3234 

                   ksGhWVlLQNiHLaasWLptLEKkLesltp.pe.................
                    +GhW +L N+HL++ W ++L  +L +l +++    + ++++  ++++++
   sj08895y2  3235 YEGHWLVLDNCHLMPHWPKELLQLLLELLGrAKvvadleseqlldqpesr 3284 

                   ...gtHpdFRLFL..TaEpaprPeehIfPiglLqnSi.KiTN...EPPtG
                   + + +H dFRL+L   aE +++     +P  l q S +++ N++ E    
   sj08895y2  3285 nvsTVHRDFRLWLivPAESSAS-----LPAVLTQHSMpVFWNqslE---- 3325 

                   lKANLlraysnDPIfdqeflemckkpaefkrllFlLCfFHAVVqERRkFG
                   l   L+ +        q +l m  +p  +++l  lL  +H +++ R  +G
   sj08895y2  3326 LGHVLIDSVEL----AQQVLYM--QP-PTQALPLLL--LHGLLLHRQLYG 3366 

                   P......................lGWNksYEFNesDLriSvdvldnyLea
                    + + ++++ ++ + ++  +++++ W      + s  r +++ l     a
   sj08895y2  3367 TrlqahrgrwsqvtltqvlqtqdQLWA-----SLSNPRAAMQEL-----A 3406 

                   nakGRqNidpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftp
                                          ++ YGG   D  Dr  L ++      p
   sj08895y2  3407 A----------------------SVFYGGPLGDTEDREALISLTQACLSP 3434 

                   el...fdgnadyeLapkidgdlgfavPpntdyeeYieyIees..LPsess
                   ++++ +++ ++ +L       +  ++P+ ++ + + e   +++ LPs  +
   sj08895y2  3435 SSgswVQPHTPQSLLA-----TLMPLPELRELDAMAECKAQMhlLPSPPE 3479 

                   PelfGLhpNAEIgfltqeteklirtlle....lQpreaggeldggsgekv
                   P l GL +     +l ++++ l++ l+ +++   p++  g   +  +e  
   sj08895y2  3480 PRLCGLSEGPQAWLLRRQSRALLSALQRsspvWVPESRRG---AQLAERR 3526 

                   srkkdssEEvvkqvlrdileklpkklCqklFdkeelmlkrt.e..eikdP
                    r+       v+  l+ ++++l+     + + ++e+ +     +++ + P
   sj08895y2  3527 LRQRLVQ---VNRRLESLQDLLT-----HVIRQDESDAPWSvLgpNARRP 3568 

                   lfvVlvQEiermNkLlkeirrSLkeLdlglkG.eltmsndlEeliksLln
                   l  Vl+ E    ++L++++ r+L  L + lkG +   s++  +++ +L  
   sj08895y2  3569 LEGVLETEALELSQLVGTLQRDLDCLLQQLKGaPPCPSRRCAAVAHALWT 3618 

                   grVPaWDmWakksyPslkpLgsWvtDLlkRirQLqeWtedsGGAk...lg
                   gr+P    W+  ++    p   W+  L++R + L +      GA+ +++ 
   sj08895y2  3619 GRLPL--PWRPHAPAGPQPPWHWLRQLSRRGQLLVRYLGV--GADassDV 3664 

                   lPkvvWLsGFFnPQsFLTAimQsvARknkwPLDkLcLdteVtkkekeeqd
                   + +v+ Ls F  P   L A++ ++A           Ld +V      + +
   sj08895y2  3665 PERVFHLSAFRHPRRLLLALRGEAA-----------LDQNVP-----SSN 3698 

                   skep..................................PedGvyVhGL.f
                   +  p+++++ +++ + ++ + ++++ + + +++++++ Pe G    GL+ 
   sj08895y2  3699 F--PgsrgsvssqlqykrlemnsnplhfrvengpnptvPERGLLLIGLqV 3746 

                   LEGArWDsktgllaeskpKeLfspmPViwlkavp....asdkqetkdvye
                   L  A WD  +g+l +s  + + +  PV    + p++++ ++  + + vy+
   sj08895y2  3747 LH-AEWDPIAGALQDSPSSQPSPLPPVSISTQAPgtsdLPAPADLT-VYS 3794 

                   cPVY......ktkaRggvLSTTGHStnyvftfnLktkedtpaskWilaGV
                   cPVY +++ +  k  ++         n v  + L+tk   ++ + +++ V
   sj08895y2  3795 CPVYmggplgTAKLQSR---------NIVMHLPLPTKL--TPNTCVQRRV 3833 

                   ALllq<-*
                    + +    
   sj08895y2  3834 HVCSP    3838 

PF03028.6.fs: domain 2 of 2, from 3230 to 3251: score 13.2, E = 0.00022
                   *->IetAaksGhWVlLQNiHLaasW<-*
                      + +A  +GhW +L N+HL++ W   
   sj08895y2  3230    LSQAMYEGHWLVLDNCHLMPHW    3251 

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