hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-19095450/chunk_1/iprscan-20090618-19095450.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj09815 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00148 340.2 1.4e-97 1 SM00149 230.5 1.5e-64 1 SM00252 224.8 7.6e-63 2 SM00326 76.9 2.4e-18 1 SM00239 65.6 6.4e-15 1 SM00233 47.2 2.1e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/2 34 146 .. 1 82 [] 32.4 6.1e-05 SM00148 1/1 325 469 .. 1 182 [] 340.2 1.4e-97 SM00252 1/2 543 636 .. 1 87 [] 114.5 1.2e-29 SM00252 2/2 657 739 .. 1 87 [] 110.3 2.2e-28 SM00326 1/1 785 841 .. 1 58 [] 76.9 2.4e-18 SM00233 2/2 802 923 .. 1 82 [] 14.8 6.2 SM00149 1/1 943 1057 .. 1 119 [] 230.5 1.5e-64 SM00239 1/1 1075 1180 .. 1 92 [] 65.6 6.4e-15 Alignments of top-scoring domains: SM00233: domain 1 of 2, from 34 to 146: score 32.4, E = 6.1e-05 *->vikeGwLlkks.....k.swkkryfvLfngvLlyyksk.kpkgsipL + G+++ + +++ + ++ + +++ ++++ + k +k g++++ sj09815 34 ALELGTVMTVFsfrksTpERRTVQVIMETRQVAWSKTAdKIEGFLDI 80 sgc.svre.p.................cFeivt.dr....tlllqAesee +++++r+++++++ ++ + + +++ cF+i ++++ +tl l+A+s+e sj09815 81 MEIkEIRPgKnskdferakavrqkedcCFTILYgTQfvlsTLSLAADSKE 130 ereeWvealqsaiaka<-* ++ W++ l+ + ++a sj09815 131 DAVNWLSGLKILHQEA 146 SM00148: domain 1 of 1, from 325 to 469: score 340.2, E = 1.4e-97 *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR qDm++PLshY+I+sSHN sj09815 325 QDMNNPLSHYWISSSHN------------------------------ 341 FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft TYLtg+Ql++ess e+Yi++L++GcRc+ELDcwdgpdg+PviyHG+T t sj09815 342 -TYLTGDQLRSESSPEAYIRCLRMGCRCIELDCWDGPDGKPVIYHGWTRT 390 skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF +kik++dV++aIK++AFvtS++P vIlS+e+Hcs++qQ++ma+ fke+F sj09815 391 TKIKFDDVVQAIKDHAFVTSSFP--VILSIEEHCSVEQQRHMAKAFKEVF 438 gdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-* gdlL+tkP+++s ++ LPsP+qL++KI++k+K sj09815 439 GDLLLTKPTEASADQ----LPSPSQLREKIIIKHK 469 SM00252: domain 1 of 2, from 543 to 636: score 114.5, E = 1.2e-29 *->epWYHGki.sReeAEklLkne....ggpdGtFLvRdSesspgdyvLS e W+H k++ R AEklL+ + ++gg+dGtFLvR+Se++p+dy+LS sj09815 543 EKWFHKKVeKRTSAEKLLQEYcmetGGKDGTFLVRESETFPNDYTLS 589 vrvkgkvkHyrIrrtdd...gkfylggtprrkFpsL.eLvehYqknslg< ++ g+v+H+rIr+t ++++ k+yl++ + +F+s+ L++hY+ + l+ sj09815 590 FWRSGRVQHCRIRSTMEggtLKYYLTD--NLTFSSIyALIQHYRETHLR 636 -* sj09815 - - SM00252: domain 2 of 2, from 657 to 739: score 110.3, E = 2.2e-28 *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvkg pWY+ +sR eAE++L++ ++dG+FL+R +e +y++++r +g sj09815 657 KPWYYDSLSRGEAEDMLMRI-PRDGAFLIRKREG-SDSYAITFRARG 701 kvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-* kvkH+rI+r++ + f+lg+ + +F+sL eLv +Y k+sl+ sj09815 702 KVKHCRINRDG-RHFVLGT--SAYFESLvELVSYYEKHSLY 739 SM00326: domain 1 of 1, from 785 to 841: score 76.9, E = 2.4e-18 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG ++v+AlYDy+a +dELsF +G i+ ++k+ +gWw+G + t + sj09815 785 RTVKALYDYKAKRSDELSFCRGALIHNVSKEPGGWWKGDYG-TRIQQ 830 lfPsnYVeeie<-* +fPsnYVe i sj09815 831 YFPSNYVEDIS 841 SM00233: domain 2 of 2, from 802 to 923: score 14.8, E = 6.2 *->vikeGwLlkks....k.swkkryfvLfngvLlyyksk.......... ++G L + ++ +++ wk y + y+ s ++ ++ + sj09815 802 SFCRGALIHNVskepGgWWKGDYGTRIQ---QYFPSNyvedistadf 845 ...............kpkgsipLsgcsvre.p........cFeivt.dr. ++ +++ ++++ ++ ++g+++L+++ v++ p +++ ++ +F + ++++ sj09815 846 eelekqiiednplgsLCRGILDLNTYNVVKaPqgknqksfVFILEPkQQg 895 ..tlllqAeseeereeWvealqsaiaka<-* ++ +++++ ee+ eW++++++ + k sj09815 896 dpPVEFATDRVEELFEWFQSIREITWKI 923 SM00149: domain 1 of 1, from 943 to 1057: score 230.5, E = 1.5e-64 *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt ls+Lv+yc+p ++ ++ +e+ + f+e+ Sf+Etk a+ + +++p sj09815 943 LSDLVVYCKPTSKT--KDNLEN-PDFREIRSFVETK-ADSIIRQKPV 985 dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq d+++yNq+ L+RvYPkG+RvDSSNY+P++ W +G+QMVALNfQT+Dk+Mq sj09815 986 DLLKYNQKGLTRVYPKGQRVDSSNYDPFRLWLCGSQMVALNFQTADKYMQ 1035 lNqGmFraNGgCGYVLKPefLR<-* +N+++F+ NG++GYVL+Pe +R sj09815 1036 MNHALFSLNGRTGYVLQPESMR 1057 SM00239: domain 1 of 1, from 1075 to 1180: score 65.6, E = 6.4e-15 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl tLtvk++ Ar+Lp+ +++ P+V+v+ + ++++ kT vv +++ sj09815 1075 TLTVKVLGARHLPklgrsiaCPFVEVEicgaeydnnkfKTTVVNDNG 1121 sgfNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippn ++P+W ++e+++Fe+ +++ + L++ Vy+++ +++ f+ ++t p sj09815 1122 --LSPIWAPTQEKVTFEIYDpnlAfLRFVVYEEdmfsdpNFLAHATYP-- 1167 nahqhsadglihlsell.ggrh.kl<-* ++ +++g+r+ +l sj09815 1168 ------------IKAVKsGFRSvPL 1180 //