hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20100311/iprscan-20100311-18121050/chunk_1/iprscan-20100311-18121050.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj09937 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07678.4.ls A-macroglobulin complement component 440.7 1.8e-129 1 PF07678.4.fs A-macroglobulin complement component 438.8 6.8e-129 1 PF01835.9.ls Alpha-2-macroglobulin family N-terminal reg 369.0 6.9e-108 1 PF01835.9.fs Alpha-2-macroglobulin family N-terminal reg 367.1 2.6e-107 1 PF07703.4.fs Alpha-2-macroglobulin family N-terminal reg 225.7 9.3e-65 2 PF07703.4.ls Alpha-2-macroglobulin family N-terminal reg 221.5 1.8e-63 1 PF00207.12.ls Alpha-2-macroglobulin family 177.6 2.9e-50 1 PF00207.12.fs Alpha-2-macroglobulin family 175.7 4.8e-50 1 PF07677.4.fs A-macroglobulin receptor 146.7 7.1e-46 1 PF07677.4.ls A-macroglobulin receptor 148.6 1.5e-41 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01835.9.ls 1/1 22 296 .. 1 307 [] 369.0 6.9e-108 PF01835.9.fs 1/1 22 296 .. 1 307 [] 367.1 2.6e-107 PF07703.4.ls 1/1 463 618 .. 1 161 [] 221.5 1.8e-63 PF07703.4.fs 2/2 463 618 .. 1 161 [] 219.5 6.7e-63 PF00207.12.fs 1/1 746 840 .. 1 106 [] 175.7 4.8e-50 PF00207.12.ls 1/1 746 840 .. 1 106 [] 177.6 2.9e-50 PF07678.4.fs 1/1 1018 1274 .. 1 277 [] 438.8 6.8e-129 PF07678.4.ls 1/1 1018 1274 .. 1 277 [] 440.7 1.8e-129 PF07677.4.ls 1/1 1384 1471 .. 1 97 [] 148.6 1.5e-41 PF07677.4.fs 1/1 1384 1471 .. 1 97 [] 146.7 7.1e-46 Alignments of top-scoring domains: PF01835.9.ls: domain 1 of 1, from 22 to 296: score 369.0, E = 6.9e-108 *->lllvsliglstqsgdpkylVfvpsllrggpvenvkvelhdrkgevla lllv+l+ +++sg+p+y+V+vpsll++++ e+ +v l ++ sj09937 22 LLLVLLPTDASVSGKPQYMVLVPSLLHTETTEKGCVLLS------YL 62 tgttdvqghvelspgkkklf.ll......alcsgfttlrslsssal.dls ++t++v++++e+ +g++ lf++l+ +++ +c+ f+ + s s++++ +l+ sj09937 63 NETVTVSASLESVRGNRSLFtDLeaendvLHCVAFAVPKSSSNEEVmFLT 112 vkipgsrf.fsIswrfkDqrqyVavqafpqveekvvlvsgqsgkvFiqTD v+++g++++f+ ++++v+v+++++ vF+qTD sj09937 113 VQVKGPTQeFK--------------------KRTTVMVKNEDSLVFVQTD 142 kpiYrPGetVhfrvvRfsrdqdgknlrPlkedipPvtveiedPdGnrvks k iY+PG+tV+frv +s+d+ n++Pl+e ip +v+i+dP+Gnr+ sj09937 143 KSIYKPGQTVKFRV--VSMDE---NFHPLNELIP--LVYIQDPKGNRIA- 184 dqwvslkldwenGlfslsfpLpeeaptGlWkivakygggpkqshsFeVeE qw+s++l e+Gl+++sfpL++e+ +G +k+v+++++g +++h+F+VeE sj09937 185 -QWQSFQL--EGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEE 231 yVlPrFeVelklppkkflildeeltiticarYlyGkPVaggkvtvslgvq +VlP+FeV+++ pk ++il+ee+++++c+ Y+yGkPV +g+vtvs++++ sj09937 232 FVLPKFEVQVT-VPKIITILEEEMNVSVCGLYTYGKPV-PGHVTVSICRK 279 pldtakkalpgylfgvpde<-* + d ++++g +++ ++e sj09937 280 YSDA--SDCHGEDSQAFCE 296 PF01835.9.fs: domain 1 of 1, from 22 to 296: score 367.1, E = 2.6e-107 *->lllvsliglstqsgdpkylVfvpsllrggpvenvkvelhdrkgevla lllv+l+ +++sg+p+y+V+vpsll++++ e+ +v l ++ sj09937 22 LLLVLLPTDASVSGKPQYMVLVPSLLHTETTEKGCVLLS------YL 62 tgttdvqghvelspgkkklf.ll......alcsgfttlrslsssal.dls ++t++v++++e+ +g++ lf++l+ +++ +c+ f+ + s s++++ +l+ sj09937 63 NETVTVSASLESVRGNRSLFtDLeaendvLHCVAFAVPKSSSNEEVmFLT 112 vkipgsrf.fsIswrfkDqrqyVavqafpqveekvvlvsgqsgkvFiqTD v+++g++++f+ ++++v+v+++++ vF+qTD sj09937 113 VQVKGPTQeFK--------------------KRTTVMVKNEDSLVFVQTD 142 kpiYrPGetVhfrvvRfsrdqdgknlrPlkedipPvtveiedPdGnrvks k iY+PG+tV+frv +s+d+ n++Pl+e ip +v+i+dP+Gnr+ sj09937 143 KSIYKPGQTVKFRV--VSMDE---NFHPLNELIP--LVYIQDPKGNRIA- 184 dqwvslkldwenGlfslsfpLpeeaptGlWkivakygggpkqshsFeVeE qw+s++l e+Gl+++sfpL++e+ +G +k+v+++++g +++h+F+VeE sj09937 185 -QWQSFQL--EGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEE 231 yVlPrFeVelklppkkflildeeltiticarYlyGkPVaggkvtvslgvq +VlP+FeV+++ pk ++il+ee+++++c+ Y+yGkPV +g+vtvs++++ sj09937 232 FVLPKFEVQVT-VPKIITILEEEMNVSVCGLYTYGKPV-PGHVTVSICRK 279 pldtakkalpgylfgvpde<-* + d ++++g +++ ++e sj09937 280 YSDA--SDCHGEDSQAFCE 296 PF07703.4.ls: domain 1 of 1, from 463 to 618: score 221.5, E = 1.8e-63 *->sksyLhlsldnkkelkvGetlkvtinaplpgk...elkitdfyYlvl sks++hl++ ++el++G t +v+++++l+g++ +lk+++fyYl++ sj09937 463 SKSFVHLEPM-SHELPCGHTQTVQAHYILNGGtllGLKKLSFYYLIM 508 srGkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdap ++G+Iv+tg++ + ++q ++kg+++isipv ++ aP arl++Y+v+ p sj09937 509 AKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVL---P 555 dgtpevvaDSvwvdVedccknkvslsfspeqykPgelkvtLrvssgdpgs g +v+ DS++ dVe+c+ nkv lsfsp+q +P++ ++Lrv +++p+s sj09937 556 TG--DVIGDSAKYDVENCLANKVDLSFSPSQSLPAS-HAHLRV-TAAPQS 601 lVgLsAVDkaVylLksg<-* ++L+AVD++V+l+k++ sj09937 602 VCALRAVDQSVLLMKPD 618 PF07703.4.fs: domain 2 of 2, from 463 to 618: score 219.5, E = 6.7e-63 *->sksyLhlsldnkkelkvGetlkvtinaplpgk...elkitdfyYlvl sks++hl++ ++el++G t +v+++++l+g++ +lk+++fyYl++ sj09937 463 SKSFVHLEPM-SHELPCGHTQTVQAHYILNGGtllGLKKLSFYYLIM 508 srGkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdap ++G+Iv+tg++ + ++q ++kg+++isipv ++ aP arl++Y+v+ p sj09937 509 AKGGIVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVL---P 555 dgtpevvaDSvwvdVedccknkvslsfspeqykPgelkvtLrvssgdpgs g +v+ DS++ dVe+c+ nkv lsfsp+q +P++ ++Lrv +++p+s sj09937 556 TG--DVIGDSAKYDVENCLANKVDLSFSPSQSLPAS-HAHLRV-TAAPQS 601 lVgLsAVDkaVylLksg<-* ++L+AVD++V+l+k++ sj09937 602 VCALRAVDQSVLLMKPD 618 PF00207.12.fs: domain 1 of 1, from 746 to 840: score 175.7, E = 4.8e-50 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk +W+W+ +++ + g+ + + vt+PD+IT+W+++Af+lS++ sj09937 746 TWIWDLVVVNSAGVAE--------VGVTVPDTITEWKAGAFCLSEDA 784 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik Gl+++++ ++l++F+pFF++L++PYSV+RgE++ +ka+v NYl+k+ i+ sj09937 785 GLGISST-ASLRAFQPFFVELTMPYSVIRGEAFTLKATVLNYLPKC--IR 831 Vrvtleese<-* V+v+le s+ sj09937 832 VSVQLEASP 840 PF00207.12.ls: domain 1 of 1, from 746 to 840: score 177.6, E = 2.9e-50 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk +W+W+ +++ + g+ + + vt+PD+IT+W+++Af+lS++ sj09937 746 TWIWDLVVVNSAGVAE--------VGVTVPDTITEWKAGAFCLSEDA 784 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik Gl+++++ ++l++F+pFF++L++PYSV+RgE++ +ka+v NYl+k+ i+ sj09937 785 GLGISST-ASLRAFQPFFVELTMPYSVIRGEAFTLKATVLNYLPKC--IR 831 Vrvtleese<-* V+v+le s+ sj09937 832 VSVQLEASP 840 PF07678.4.fs: domain 1 of 1, from 1018 to 1274: score 438.8, E = 6.8e-129 *->qGYqrqLtYrkpDGSYSAFgnrd..kpgSTWLTAFVvKvFaqArkrq +GYqrqL+Y+++DGSYS+Fg+r+++++g+TWLTAFV+K+FaqAr sj09937 1018 TGYQRQLNYKHYDGSYSTFGERYgrNQGNTWLTAFVLKTFAQARA-- 1062 eagqeyItdIdenvIckavkWLilrQqkpdGsFrEsgpviHreMqGgvgg yI +Ide +I++a+ WL++rQ+ ++G+Fr+sg +++++ +G g sj09937 1063 -----YI-FIDEAHITQALIWLSQRQK-DNGCFRSSGSLLNNAIKG---G 1102 vdgdvsLTAFVlIALlEarkicesvnslkesieKAldYLesqlesltnpp v+++v+L+A+++IALlE ++ ++ ++++++Al +Les+++++++ sj09937 1103 VEDEVTLSAYITIALLEIPLT-VT----HPVVRNALFCLESAWKTAQEG- 1146 YalA.VYT.AItaYALaLagkpekakallkkkLdslasedgdsrhWqese ++VYT+A++aYA+aLag+++k+k++l k+L++ a+++++s+hW+ sj09937 1147 DHGShVYTkALLAYAFALAGNQDKRKEVL-KSLNEEAVKKDNSVHWE--- 1192 ssqdppksr.lyyflrypkataadVEtTAYALLalLta.saklkakdlee ++q+p+ + +++y p+a++a+VE+T+Y+LLa+Lta++a + +dl++ sj09937 1193 RPQKPKAPVgHFY---EPQAPSAEVEMTSYVLLAYLTAqPA-PTSEDLTS 1238 agpIvrWLikQrnygGGFsSTQDTvvALqALaeYaa<-* a+ Iv+W++kQ+n+ GGFsSTQDTvvAL+AL++Y+a sj09937 1239 ATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGA 1274 PF07678.4.ls: domain 1 of 1, from 1018 to 1274: score 440.7, E = 1.8e-129 *->qGYqrqLtYrkpDGSYSAFgnrd..kpgSTWLTAFVvKvFaqArkrq +GYqrqL+Y+++DGSYS+Fg+r+++++g+TWLTAFV+K+FaqAr sj09937 1018 TGYQRQLNYKHYDGSYSTFGERYgrNQGNTWLTAFVLKTFAQARA-- 1062 eagqeyItdIdenvIckavkWLilrQqkpdGsFrEsgpviHreMqGgvgg yI +Ide +I++a+ WL++rQ+ ++G+Fr+sg +++++ +G g sj09937 1063 -----YI-FIDEAHITQALIWLSQRQK-DNGCFRSSGSLLNNAIKG---G 1102 vdgdvsLTAFVlIALlEarkicesvnslkesieKAldYLesqlesltnpp v+++v+L+A+++IALlE ++ ++ ++++++Al +Les+++++++ sj09937 1103 VEDEVTLSAYITIALLEIPLT-VT----HPVVRNALFCLESAWKTAQEG- 1146 YalA.VYT.AItaYALaLagkpekakallkkkLdslasedgdsrhWqese ++VYT+A++aYA+aLag+++k+k++l k+L++ a+++++s+hW+ sj09937 1147 DHGShVYTkALLAYAFALAGNQDKRKEVL-KSLNEEAVKKDNSVHWE--- 1192 ssqdppksr.lyyflrypkataadVEtTAYALLalLta.saklkakdlee ++q+p+ + +++y p+a++a+VE+T+Y+LLa+Lta++a + +dl++ sj09937 1193 RPQKPKAPVgHFY---EPQAPSAEVEMTSYVLLAYLTAqPA-PTSEDLTS 1238 agpIvrWLikQrnygGGFsSTQDTvvALqALaeYaa<-* a+ Iv+W++kQ+n+ GGFsSTQDTvvAL+AL++Y+a sj09937 1239 ATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGA 1274 PF07677.4.ls: domain 1 of 1, from 1384 to 1471: score 148.6, E = 1.5e-41 *->SnMaivdVkLlSGFspdkedLkkLslgvdvyliskyEidkalsedgk SnMaivdVk++SGF+p k ++k +l+++++ +s++E++ ++ sj09937 1384 SNMAIVDVKMVSGFIPLKPTVK--MLERSNH-VSRTEVS-----SNH 1422 VilYlDklsskeeeCfsFraeqtveVgnlqPAsVvVYDYYeperrctkfY V++YlDk+s+++ + + F++ q+v+V++l+PA V+VYDYYe++++++++Y sj09937 1423 VLIYLDKVSNQT-LSLFFTVLQDVPVRDLKPAIVKVYDYYETDEFAIAEY 1471 <-* sj09937 - - PF07677.4.fs: domain 1 of 1, from 1384 to 1471: score 146.7, E = 7.1e-46 *->SnMaivdVkLlSGFspdkedLkkLslgvdvyliskyEidkalsedgk SnMaivdVk++SGF+p k ++k +l+++++ +s++E++ ++ sj09937 1384 SNMAIVDVKMVSGFIPLKPTVK--MLERSNH-VSRTEVS-----SNH 1422 VilYlDklsskeeeCfsFraeqtveVgnlqPAsVvVYDYYeperrctkfY V++YlDk+s+++ + + F++ q+v+V++l+PA V+VYDYYe++++++++Y sj09937 1423 VLIYLDKVSNQT-LSLFFTVLQDVPVRDLKPAIVKVYDYYETDEFAIAEY 1471 <-* sj09937 - - //