ORK00235

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK00235

Order Kazusa clone(s) from :

Accession No
Product ID	ORK00235
Clone name	fk07908
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SYBU
cDNA sequence	DNA sequence (2934 bp) Predicted protein sequence (691 aa)
HaloTag ORF Clone	FHC00235
Flexi ORF Clone	FXC00235
Description	Syntabulin (Syntaxin-1-binding protein) (Golgi-localized syntaphilin- related protein).

Features of the cloned cDNA sequence

Description

Length: 2934 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	697 bp
Genome contig ID	gi51511724r_110555614
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- CAGCATGATGAAAATAAAGATTAGTGTTTCCATTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATAAATGTTTTATCCTCCCATAAAATAATAATTATTTCTGTGATTTTA

Features of the protein sequence

Description

Length: 691 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_528216	98.6	similar to Golg...	Pan troglodytes
XP_001087887	97.3	similar to Golg...	Macaca mulatta
Q9NX95	100.0	Syntabulin; Syn...	Homo sapiens
BAG53323	99.8	unnamed protein...	Homo sapiens
BAD72976	99.8	Golgi-localized...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	634	SFLVDLLAVAAPVVPTVLWAFST	656	PRIMARY	23
SOSUI2	2	661	TDPVYNIGALLRGCCVVALHSL	682	SECONDARY	22