ORK00285

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK00285

Order Kazusa clone(s) from :

Accession No
Product ID	ORK00285
Clone name	af06478
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	FAM120B
cDNA sequence	DNA sequence (7335 bp) Predicted protein sequence (917 aa)
HaloTag ORF Clone	FHC00285
Flexi ORF Clone	FXC00285
Description	family with sequence similarity 120B

Features of the cloned cDNA sequence

Description

Length: 7335 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	4496 bp
Genome contig ID	gi89161210f_170357771
PolyA signal sequence (ATTAAA,-17)	+--------+--------+----*----+---- TAAGATACCAATTTGTCTATTAAATCAATTGCTTC
Flanking genome sequence (213085 - 213134)	----+--------+--------+--------+--------+----* CAGCCACAGCCCTTGTTATTCAAATCAAGACAAAAAAAAGTCTGTGGAGT

Features of the protein sequence

Description

Length: 917 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG10498	0	100.0	FAM120B protein...	synthetic construct
XP_001084300	2.6e-214	92.4	similar to regu...	Macaca mulatta
XP_520602	7e-213	94.8	PPARgamma const...	Pan troglodytes
XP_855466	2.9e-148	71.4	hypothetical pr...	Canis lupus fam...
BAB01653	7.4e-147	97.2	unnamed protein...	Macaca fascicularis

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR004829	390	446	PD153432	Cell surface antigen
ScanRegExp	IPR000577	681	693	PS00933	Carbohydrate kinase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	720	VESPFQALCCLLIYLFVQVDTLC	742	PRIMARY	23
SOSUI2	2	776	AVQLGSLLVRGLTTLVLVNSACG	798	SECONDARY	23