ORK01548

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01548

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01548
Clone name	ej00459
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ALDH1A3
cDNA sequence	DNA sequence (3439 bp) Predicted protein sequence (528 aa)
HaloTag ORF Clone	FHC01548
Flexi ORF Clone	FXC01548
Description	Aldehyde dehydrogenase 1A3 (EC 1.2.1.5) (Aldehyde dehydrogenase 6) (Retinaldehyde dehydrogenase 3) (RALDH-3).

Features of the cloned cDNA sequence

Description

Length: 3439 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1850 bp
Genome contig ID	gi51511731f_99137586
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- ATGCGAGAATGATAAAATAAAATTGGATATTTGAG
Flanking genome sequence (136767 - 136816)	----+--------+--------+--------+--------+----* AAACATTGTGCTTTTTCATTTAAAGACCAAAGTCATTTGAATTCGATGGC

Features of the protein sequence

Description

Length: 528 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
P47895	4.5e-216	100.0	Aldehyde dehydr...	Homo sapiens
XP_001142882	9.6e-216	99.8	aldehyde dehydr...	Pan troglodytes
BAG35229	1.1e-215	99.8	unnamed protein...	Homo sapiens
AAA79036	2e-215	99.8	aldehyde dehydr...	Homo sapiens
XP_001083856	2.5e-212	98.2	aldehyde dehydr...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002086	56	519	PF00171	Aldehyde dehydrogenase
ScanRegExp	IPR002086	295	302	PS00687	Aldehyde dehydrogenase
ScanRegExp	IPR002086	323	334	PS00070	Aldehyde dehydrogenase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	197	NFPLLMLVWKLAPALCCGNTMVL	219	PRIMARY	23
SOSUI2	2	240	GFPPGVVNIVPGFGPTVGAAISS	262	SECONDARY	23