ORK01551

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01551

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01551
Clone name	ej00632
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	SLC26A2
cDNA sequence	DNA sequence (3692 bp) Predicted protein sequence (827 aa)
HaloTag ORF Clone	FHC01551
Flexi ORF Clone	FXC01551
Description	solute carrier family 26 (sulfate transporter), member 2

Features of the cloned cDNA sequence

Description

Length: 3692 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1208 bp
Genome contig ID	gi51511721f_149220497
PolyA signal sequence (None)	+--------+--------+----*----+---- AGGAATAGGGAACTAATTTATGAAACAGCCATCTT
Flanking genome sequence (122282 - 122331)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAGTAAACTGCAAAAGTACAAAATCATTTTTCAATCTGT

Features of the protein sequence

Description

Length: 827 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
P50443	100.0	Sulfate transpo...	Homo sapiens
BAG35488	99.8	unnamed protein...	Homo sapiens
NP_000103	99.8	sulfate transpo...	Homo sapiens
XP_001164642	99.4	solute carrier ...	Pan troglodytes
CAG27404	88.5	solute carrier ...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011547	324	634	PF00916	Sulphate transporter
HMMPfam	IPR002645	657	803	PF01740	Sulphate transporter/antisigma-factor antagonist STAS
HMMTigr	IPR001902	182	803	TIGR00815	Sulphate anion transporter
ProfileScan	IPR002645	656	807	PS50801	Sulphate transporter/antisigma-factor antagonist STAS
ScanRegExp	IPR001902	225	246	PS01130	Sulphate anion transporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	174	KNMILGFLPVLQWLPKYDL	192	SECONDARY	19
	2	197	LGDVMSGLIVGILLVPQSIAYSL	219	PRIMARY	23
	3	223	QEPVYGLYTSFFASIIYFLLGTS	245	SECONDARY	23
	4	248	ISVGIFGVLCLMIGETVDRELQK	270	SECONDARY	23
	5	302	KSCYAIMVGSTVTFIAGVYQVAM	324	SECONDARY	23
	6	331	FVSVYLSDALLSGFVTGASFTIL	353	SECONDARY	23
	7	388	TNLCDLITSLLCLLVLLPTKELN	410	SECONDARY	23
	8	418	KAPIPIELVVVVAATLASHFGKL	440	SECONDARY	23
	9	467	IPSVAVDAIAISIIGFAITVSLS	489	PRIMARY	23
	10	536	STGCHTQLSGVVTALVLLLVLLV	558	PRIMARY	23
	11	605	VTMLSSALLSTEIGLLVGVCFSI	627	PRIMARY	23