Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01894
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Accession No
Product ID ORK01894
Clone name bh00020
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol SIDT1
cDNA sequence DNA sequence (4789 bp)
Predicted protein sequence (929 aa)
Flexi ORF Clone FXC01894
Description SID1 transmembrane family member 1 precursor.
Features of the cloned cDNA sequence

Length: 4789 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1866 bp
Genome contig ID gi89161205f_114634135
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
AAAAATAAAAAAAAATAAAAATTTGAACCTGTTTC
Flanking genome sequence
(196978 - 197027)
----+----*----+----*----+----*----+----*----+----*
ACTATGGCTAGTTTGACCTAATTTCTTTATCTTAACGCACTATGGTTTCT

Features of the protein sequence

Length: 929 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAI17223 0 100.0 SIDT1 protein [...
Homo sapiens
XP_001158341 0 99.6 SID1 transmembr...
Pan troglodytes
EAW79633 0 99.3 SID1 transmembr...
Homo sapiens
Q9NXL6 0 99.2 SID1 transmembr...
Homo sapiens
XP_526266 0 99.0 hypothetical pr...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
ScanRegExp IPR002086 5 12 PS00687 Aldehyde dehydrogenase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 100 GCLRLALLCALPWLLLAASPGHP 122 PRIMARY 23
2 405 KSSLFSVFIFLSFYLGCLLVGFV 427 PRIMARY 23
3 542 FWNIITIAVFYALPVIQLVITYQ 564 PRIMARY 23
4 584 HPLGVLSAFNNILSNLGHVLLGF 606 SECONDARY 23
5 671 DTSFMYMIAGLCMLKLYQ 688 SECONDARY 18
6 702 YASFAVVIMVTVLGVVFGKNDVW 724 PRIMARY 23
7 726 WVIFSAIHVLASLALSTQIYYMG 748 PRIMARY 23
8 784 DRMVLLVVGNLVNWSFALFGLIY 806 SECONDARY 23
9 813 SYMLGIFICNLLLYLAFYIIMK 834 PRIMARY 22
10 843 PVPLFCIVATAVMWAAALYFFFQ 865 PRIMARY 23
11 896 WHFLSATALFFSFLVLLTLDDDL 918 SECONDARY 23
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