ORK02019

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK02019

Order Kazusa clone(s) from :

Accession No
Product ID	ORK02019
Clone name	hh03853
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	TMX4
cDNA sequence	DNA sequence (6141 bp) Predicted protein sequence (377 aa)
HaloTag ORF Clone	FHC02019
Flexi ORF Clone	FXC02019
Description	Thioredoxin domain-containing protein 13 precursor.

Features of the cloned cDNA sequence

Description

Length: 6141 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	4885 bp
Genome contig ID	gi51511747r_7806024
PolyA signal sequence (None)	+--------+--------+----*----+---- CAGCAAAAAATATTAATTTGTTAAAAAAAATTTTC
Flanking genome sequence (99987 - 99938)	----+--------+--------+--------+--------+----* CTTCGTGTCCATCCTCCATCTAGTCTGTTCATTCATTCTCTCTCTTTCTC

Features of the protein sequence

Description

Length: 377 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9H1E5	2.5e-116	100.0	Thioredoxin-rel...	Homo sapiens
BAC11237	6.6e-116	99.7	unnamed protein...	Homo sapiens
AAH33787	9.5e-116	99.7	Thioredoxin-rel...	Homo sapiens
XP_001116009	2.8e-113	97.1	thioredoxin dom...	Macaca mulatta
BAE01045	4.5e-113	96.8	unnamed protein...	Macaca fascicularis

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013766	66	166	PF00085	Thioredoxin domain
ScanRegExp	IPR006662	84	102	PS00194	Thioredoxin-related

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	34	CGPQLTALLAAWIAAVAATAGPE	56	PRIMARY	23
	2	175	TGWKSPASLTMSGMAGLFSISGK	197	SECONDARY	23
	3	202	HNYFTVTLGIPAWCSYVFFVIAT	224	PRIMARY	23
	4	228	GLFMGLVLVVISECFYVPLPRHL	250	PRIMARY	23