Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK02034
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Accession No
Product ID ORK02034
Clone name fh04333s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol UPF2
cDNA sequence DNA sequence (5568 bp)
Predicted protein sequence (1298 aa)
Flexi ORF Clone FXC02034
Description UPF2 regulator of nonsense transcripts homolog (yeast)
Features of the cloned cDNA sequence

Length: 5568 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1275 bp
Genome contig ID gi89161187r_11902028
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
ACCTTTGCCGATGCTGCAATAAAGTGTTGTAATTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGATTTGGCGTGGTGTTGTTTTGTTGGGTTTGGGTTTTGGAAACCGATTG

Features of the protein sequence

Length: 1298 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_507656 0 99.3 UPF2 regulator ...
Pan troglodytes
Q9HAU5 0 100.0 Regulator of no...
Homo sapiens
AAG48509 0 99.9 hUPF2 [Homo sap...
Homo sapiens
XP_857902 0 97.7 similar to UPF2...
Canis lupus fam...
XP_001249612 0 97.6 UPF2 regulator ...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003890 194 457 PF02854 MIF4G-like
IPR003890 595 784 PF02854 MIF4G-like
IPR003890 802 1012 PF02854 MIF4G-like
IPR007193 1062 1244 PF04050 Up-frameshift suppressor 2
HMMSmart IPR003890 194 390 SM00543 MIF4G-like
IPR003890 595 784 SM00543 MIF4G-like
IPR003890 799 1012 SM00543 MIF4G-like
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