Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK05469
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB209851 |
|---|---|
| Product ID | ORK05469 |
| Clone name | ef01462 |
| Vector information |
The cDNA fragment was inserted at the XhoI-SacI site
of the ...
|
| Symbol | HSPG2 |
| cDNA sequence | DNA sequence (8066 bp) Predicted protein sequence (2331 aa) |
| Description | Basement membrane-specific heparan sulfate proteoglycan core protein precursor (HSPG) (Perlecan) (PLC). |
Length: 8066 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 1070 bp |
|---|---|
| Genome contig ID | gi89161185r_21921326 |
| PolyA signal sequence (AATAAA,-21) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 2331 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR013151 | 5 | 59 | PF00047 | Immunoglobulin |
| IPR013151 | 106 | 160 | PF00047 | Immunoglobulin | |
| IPR013098 | 185 | 265 | PF07679 | Immunoglobulin I-set | |
| IPR013151 | 295 | 349 | PF00047 | Immunoglobulin | |
| IPR013098 | 377 | 460 | PF07679 | Immunoglobulin I-set | |
| IPR013151 | 488 | 542 | PF00047 | Immunoglobulin | |
| IPR013151 | 584 | 638 | PF00047 | Immunoglobulin | |
| IPR013151 | 681 | 735 | PF00047 | Immunoglobulin | |
| IPR013098 | 767 | 850 | PF07679 | Immunoglobulin I-set | |
| IPR013151 | 879 | 933 | PF00047 | Immunoglobulin | |
| IPR013098 | 962 | 1048 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 1052 | 1142 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 1152 | 1235 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 1239 | 1322 | PF07679 | Immunoglobulin I-set | |
| IPR013151 | 1354 | 1408 | PF00047 | Immunoglobulin | |
| IPR013098 | 1427 | 1512 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 1516 | 1598 | PF07679 | Immunoglobulin I-set | |
| IPR012680 | 1632 | 1768 | PF02210 | Laminin G | |
| IPR006209 | 1788 | 1820 | PF00008 | EGF-like | |
| IPR006209 | 1828 | 1861 | PF00008 | EGF-like | |
| IPR012680 | 1897 | 2025 | PF02210 | Laminin G | |
| IPR006209 | 2048 | 2080 | PF00008 | EGF-like | |
| IPR006209 | 2087 | 2115 | PF00008 | EGF-like | |
| IPR012680 | 2174 | 2304 | PF02210 | Laminin G | |
| HMMSmart | IPR003599 | 1 | 75 | SM00409 | Immunoglobulin subtype |
| IPR003598 | 3 | 64 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003596 | 7 | 160 | SM00406 | Immunoglobulin V-set | |
| IPR003599 | 98 | 176 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 104 | 165 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 191 | 266 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 197 | 258 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 287 | 365 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 293 | 354 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 383 | 461 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 389 | 450 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 480 | 556 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 486 | 547 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003596 | 490 | 542 | SM00406 | Immunoglobulin V-set | |
| IPR003599 | 576 | 654 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 582 | 643 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 673 | 751 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 679 | 740 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003596 | 728 | 835 | SM00406 | Immunoglobulin V-set | |
| IPR003599 | 773 | 851 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 779 | 840 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 871 | 950 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 877 | 938 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 968 | 1049 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 974 | 1038 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003596 | 1043 | 1127 | SM00406 | Immunoglobulin V-set | |
| IPR003599 | 1059 | 1143 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1065 | 1132 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 1158 | 1236 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1164 | 1225 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003596 | 1168 | 1307 | SM00406 | Immunoglobulin V-set | |
| IPR003599 | 1245 | 1323 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1251 | 1312 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 1346 | 1424 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1352 | 1413 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 1435 | 1513 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1441 | 1502 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 1521 | 1599 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 1527 | 1588 | SM00408 | Immunoglobulin subtype 2 | |
| IPR001791 | 1624 | 1768 | SM00282 | Laminin G | |
| IPR006210 | 1787 | 1821 | SM00181 | EGF | |
| IPR001881 | 1788 | 1821 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 1827 | 1862 | SM00181 | EGF | |
| IPR001881 | 1828 | 1862 | SM00179 | EGF-like calcium-binding | |
| IPR001791 | 1889 | 2025 | SM00282 | Laminin G | |
| IPR001881 | 2044 | 2081 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 2047 | 2081 | SM00181 | EGF | |
| IPR001881 | 2083 | 2116 | SM00179 | EGF-like calcium-binding | |
| IPR006210 | 2086 | 2116 | SM00181 | EGF | |
| IPR001791 | 2166 | 2304 | SM00282 | Laminin G | |
| ProfileScan | IPR007110 | 1 | 73 | PS50835 | Immunoglobulin-like |
| IPR007110 | 82 | 174 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 185 | 264 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 276 | 363 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 377 | 459 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 475 | 556 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 570 | 652 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 663 | 749 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 767 | 849 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 861 | 946 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 962 | 1047 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1052 | 1141 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1152 | 1232 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1239 | 1323 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1340 | 1424 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1427 | 1511 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 1516 | 1597 | PS50835 | Immunoglobulin-like | |
| IPR001791 | 1603 | 1788 | PS50025 | Laminin G | |
| IPR000742 | 1786 | 1821 | PS50026 | EGF-like | |
| IPR000742 | 1824 | 1862 | PS50026 | EGF-like | |
| IPR001791 | 1868 | 2048 | PS50025 | Laminin G | |
| IPR000742 | 2044 | 2081 | PS50026 | EGF-like | |
| IPR000742 | 2083 | 2116 | PS50026 | EGF-like | |
| IPR001791 | 2141 | 2329 | PS50025 | Laminin G | |
| ScanRegExp | IPR013032 | 1809 | 1820 | PS00022 | EGF-like region |
| IPR013032 | 1809 | 1820 | PS01186 | EGF-like region | |
| IPR013032 | 1850 | 1861 | PS00022 | EGF-like region | |
| IPR013032 | 2069 | 2080 | PS00022 | EGF-like region | |
| IPR013032 | 2069 | 2080 | PS01186 | EGF-like region | |
| IPR013032 | 2104 | 2115 | PS00022 | EGF-like region | |
| IPR013032 | 2104 | 2115 | PS01186 | EGF-like region |
