ORK05506

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05506

Order Kazusa clone(s) from :

Accession No	AB209849
Product ID	ORK05506
Clone name	ef01196
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	IL13RA1
cDNA sequence	DNA sequence (3960 bp) Predicted protein sequence (426 aa)
Description	Interleukin-13 receptor alpha-1 chain precursor (IL-13R-alpha-1) (IL- 13RA-1) (CD213a1 antigen).

Features of the cloned cDNA sequence

Description

Length: 3960 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	2678 bp
Genome contig ID	gi89161218f_117659007
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- GCTTGAGTAAAATAAATATTGTCTTTTTGTATGTC
Flanking genome sequence (153518 - 153567)	----+--------+--------+--------+--------+----* ACCCAAATGTTTTCCTTTGGTCTTATTTTGGGGAAATGGTGGGAGGTAGA

Features of the protein sequence

Description

Length: 426 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93086	5.1e-185	100.0	interleukin 13 ...	Homo sapiens
P78552	1.5e-184	99.7	Interleukin-13 ...	Homo sapiens
ABM84380	9e-184	99.5	interleukin 13 ...	synthetic construct
AAB37127	1.4e-183	99.2	interleukin-13 ...	Homo sapiens
AAH15768	3e-183	99.5	Interleukin 13 ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
ScanRegExp	IPR003532	141	172	PS01356	Short hematopoietin receptor

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	2	WPARLCGLWALLLCAG	17	SECONDARY	16
SOSUI2	2	346	TMLLIVPVIVAGAIIVLLLYLK	367	PRIMARY	22