ORK07411

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07411

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Accession No	AB209272
Product ID	ORK07411
Clone name	fk03371
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	ZDHHC16
cDNA sequence	DNA sequence (3540 bp) Predicted protein sequence (204 aa)
Description	Probable palmitoyltransferase ZDHHC16 (EC 2.3.1.-) (Zinc finger DHHC domain-containing protein 16) (DHHC-16).

Features of the cloned cDNA sequence

Description

Length: 3540 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1997 bp
Genome contig ID	gi89161187f_99100444
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- GCTTAAGGGAGCACAAATAAAGGTATTCGATTTTT
Flanking genome sequence (106668 - 106717)	----+--------+--------+--------+--------+----* AAAGATATGTAGCTTCTCACTCTCTGCCTCACGATAGGGCAGGGAAGGGG

Features of the protein sequence

Description

Length: 204 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92509	1.1e-93	100.0	Abl-philin 2 is...	Homo sapiens
XP_001103229	2.5e-79	100.0	similar to Abl-...	Macaca mulatta
XP_001163711	2.5e-79	100.0	Abl-philin 2 is...	Pan troglodytes
AAH33157	2.5e-79	100.0	Zinc finger, DH...	Homo sapiens
CAI40783	3.5e-79	98.3	zinc finger, DH...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001594	139	192	PD003041	Zinc finger
ProfileScan	IPR001594	172	192	PS50216	Zinc finger

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	94	RWFGVVFVVLVIVLTGSIVAIAY	116	PRIMARY	23
SOSUI2	2	134	WHFFYSHWNLILIVFHYYQAIT	155	SECONDARY	22