Length: 3162 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR |
635 bp |
Genome contig ID |
gi89161210f_44110273 |
PolyA signal sequence (AATAAA,-23) |
+----*----+----*----+----*----+---- TTTTTCCTTTAAAATAAAAACAAAGAAAAGCTCTG |
Flanking genome sequence (120962 - 121011) |
----+----*----+----*----+----*----+----*----+----* AGGCAGGTGTCTGACTTGTGCTGCCCTGGGCACCTGGGCCGGGTCCCCAC |
Length: 841 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)
|
Entry |
Exp |
ID% |
Protein |
Source |
EAX04247 |
0 |
100.0 |
transmembrane p...
|
Homo sapiens
|
Q5T3F8 |
0 |
100.0 |
Transmembrane p...
|
Homo sapiens
|
XP_001497713 |
0 |
99.0 |
similar to tran...
|
Equus caballus
|
XP_001929588 |
0 |
98.9 |
transmembrane p...
|
Sus scrofa
|
Q3TWI9 |
0 |
98.1 |
Transmembrane p...
|
Mus musculus
|
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
Search method |
interpro_ID |
From |
To |
Entry |
Definition |
HMMPfam |
IPR003864 |
357 |
790 |
PF02714 |
Protein of unknown function DUF221 |
Prediction of transmembrane (TM) segments
Method |
No. |
N terminal |
transmembrane region |
C terminal |
type |
length |
SOSUI2 |
1 |
5 |
AAVAAMLPFLLATLGTTALNNSN |
27 |
SECONDARY |
23 |
2 |
50 |
VPTVLALDFMCFLALLFLFSIL |
71 |
PRIMARY |
22 |
3 |
167 |
IIGLLVVVGVLSVGIVLPVNFSG |
189 |
PRIMARY |
23 |
4 |
211 |
NNLLWLHTSFAFLYLLLTVYSM |
232 |
SECONDARY |
22 |
5 |
442 |
RCLVINVVLFILLFFLTTPAIII |
464 |
PRIMARY |
23 |
6 |
488 |
FPTLLLWCFSALLPTIVYYSAFF |
510 |
PRIMARY |
23 |
7 |
528 |
YTFLIFMVLLLPSLGLSSLDLFF |
550 |
PRIMARY |
23 |
8 |
584 |
ASAFIGNAMDLLRIPGLLMYMIR |
606 |
SECONDARY |
23 |
9 |
639 |
VFTVVMTYSITCPIIVPFGLMYM |
661 |
PRIMARY |
23 |
10 |
688 |
GAVNQVVAAPILCLFWLLFFSTM |
710 |
PRIMARY |
23 |
11 |
721 |
FTFVVLVITIVICLCHVCFGHFK |
743 |
PRIMARY |
23 |