ORK10402

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK10402

Order Kazusa clone(s) from :

Accession No
Product ID	ORK10402
Clone name	ff05174
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	FAM189A1
cDNA sequence	DNA sequence (4482 bp) Predicted protein sequence (464 aa)
Description	Transmembrane protein KIAA0574

Features of the cloned cDNA sequence

Description

Length: 4482 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	3086 bp
Genome contig ID	gi51511731r_27099748
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TGATCCGTGTTTTAATAAAAAGAAGTATTTCTGGC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* CTCTGTGTCTCTGAGGTCTAACTGGGACAGAGGCAGGCTGAGAGGCTGTG

Features of the protein sequence

Description

Length: 464 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
NP_056122	9.3e-136	99.5	hypothetical pr...	Homo sapiens
EAW51514	7.6e-129	99.0	hCG27623 [Homo ...	Homo sapiens
XP_001115936	1.7e-123	94.4	hypothetical pr...	Macaca mulatta
XP_002194890	9e-64	55.1	hypothetical pr...	Taeniopygia guttata
AAI21477	2.7e-63	53.1	hypothetical pr...	Xenopus (Silura...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	16	LVITFFMLLSAVCVMLNLAGSIL	38	PRIMARY	23
SOSUI2	2	102	LFSVCALNVLSTIVCALATAMCC	124	PRIMARY	23