ORK06863

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06863

Order Kazusa clone(s) from :

Accession No	AB208931
Product ID	ORK06863
Clone name	fh08844
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC27A5
cDNA sequence	DNA sequence (5229 bp) Predicted protein sequence (295 aa)
Description	Bile acyl-CoA synthetase (EC 6.2.1.7) (BACS) (Bile acid CoA ligase) (BA-CoA ligase) (BAL) (Cholate--CoA ligase) (Very long-chain acyl-CoA synthetase homolog 2) (VLCSH2) (VLCS-H2) (Very long chain acyl-CoA synthetase-related protein) (VLACS-related) (VLACS

Features of the cloned cDNA sequence

Description

Length: 5229 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Features of the protein sequence

Description

Length: 295 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92168	7.3e-115	100.0	solute carrier ...	Homo sapiens
Q9Y2P5	8e-87	100.0	Bile acyl-CoA s...	Homo sapiens
XP_512953	5.4e-85	98.2	solute carrier ...	Pan troglodytes
XP_001148656	5.6e-85	98.2	solute carrier ...	Pan troglodytes
XP_001148729	5.9e-85	98.2	solute carrier ...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	MGVRQQLALLLLLLLLLWGLGQP	28	PRIMARY	23
	2	34	VALTLRWLLGDPTCCVLLGLAML	56	PRIMARY	23
	3	65	VPHGLSLAAAALALTLLPARLPP	87	PRIMARY	23
	4	89	LRWLPADVIFLAKILHLGLK	108	SECONDARY	20
	5	180	TALLVLASQAVPALCMWLGLAKL	202	PRIMARY	23
	6	259	DWQRPLVPTCLLSQAIIIKTYEQ	281	SECONDARY	23