ORK04668

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04668

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Accession No	AB209528
Product ID	ORK04668
Clone name	fk10432
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	CTAGE5
cDNA sequence	DNA sequence (3441 bp) Predicted protein sequence (808 aa)
Description	Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5 protein) (cTAGE family member 5) (Meningioma-expressed antigen 6/11).

Features of the cloned cDNA sequence

Description

Length: 3441 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	381 bp
Genome contig ID	gi51511730f_38715181
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- AGTAACTTTATGCTTAAATAAATTATAGTTGATTT
Flanking genome sequence (174421 - 174470)	----+--------+--------+--------+--------+----* AAAGATTTGTTTGGCATTGATAATAATAAAATCAGTAGTTTTTCTATAAC

Features of the protein sequence

Description

Length: 808 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92765	0	100.0	CTAGE family, m...	Homo sapiens
O15320	7.4e-211	99.3	Cutaneous T-cel...	Homo sapiens
EAW65806	8.1e-211	99.2	CTAGE family, m...	Homo sapiens
NP_005921	8.1e-211	99.2	cutaneous T-cel...	Homo sapiens
EAW65814	1.3e-210	99.7	CTAGE family, m...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	13	KYIFKNLLFFILKVVAALPEGM	34	SECONDARY	22
SOSUI2	2	44	PWELVICAAVVGFFAVLFFLWRS	66	PRIMARY	23