ORK04329

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04329

Order Kazusa clone(s) from :

Accession No	AK226151
Product ID	ORK04329
Clone name	fk13667
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	PRRT2
cDNA sequence	DNA sequence (2700 bp) Predicted protein sequence (300 aa)
Description	Uncharacterized protein C16orf53.

Features of the cloned cDNA sequence

Description

Length: 2700 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1797 bp
Genome contig ID	gi51511732f_29632015
PolyA signal sequence (None)	+--------+--------+----*----+---- AAGATGCAGAGCTATCATCTCTTAAAAAAAAAAAT
Flanking genome sequence	None

Features of the protein sequence

Description

Length: 300 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAC11067	7.6e-77	99.6	unnamed protein...	Homo sapiens
Q7Z6L0	1.5e-76	99.6	Proline-rich tr...	Homo sapiens
AAH11405	2e-76	99.3	Proline-rich tr...	Homo sapiens
CAD38881	3e-76	99.3	hypothetical pr...	Homo sapiens
Q5RAC1	3.5e-73	96.9	Proline-rich tr...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	NULL	217	288	PD010447	NULL
HMMPfam	IPR007593	209	286	PF04505	Interferon-induced transmembrane protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	225	LAILSCFCPMWPVNIVAFAYAVM	247	PRIMARY	23
SOSUI2	2	270	LSIVALVGGVLIIIASCVINLGG	292	PRIMARY	23