Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK00241
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK00241 |
| Clone name | fj09513s1 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | CNTN3 |
| cDNA sequence | DNA sequence (4928 bp) Predicted protein sequence (1031 aa) |
|
HaloTag ORF Clone |
FHC00241
|
| Flexi ORF Clone | FXC00241 |
| Description | contactin 3 (plasmacytoma associated) |
Length: 4928 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 1830 bp |
|---|---|
| Genome contig ID | gi89161205r_74294412 |
| PolyA signal sequence (AATAAA,-19) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1031 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR013151 | 46 | 105 | PF00047 | Immunoglobulin |
| IPR013151 | 140 | 201 | PF00047 | Immunoglobulin | |
| IPR013098 | 230 | 317 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 321 | 406 | PF07679 | Immunoglobulin I-set | |
| IPR013098 | 411 | 499 | PF07679 | Immunoglobulin I-set | |
| IPR013151 | 517 | 582 | PF00047 | Immunoglobulin | |
| IPR003961 | 601 | 690 | PF00041 | Fibronectin | |
| IPR003961 | 703 | 793 | PF00041 | Fibronectin | |
| IPR003961 | 805 | 894 | PF00041 | Fibronectin | |
| IPR003961 | 906 | 989 | PF00041 | Fibronectin | |
| HMMSmart | IPR003599 | 38 | 122 | SM00409 | Immunoglobulin subtype |
| IPR003598 | 44 | 110 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 132 | 220 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 138 | 206 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 237 | 318 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 243 | 307 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 327 | 407 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 333 | 396 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 419 | 500 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 425 | 489 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003599 | 509 | 598 | SM00409 | Immunoglobulin subtype | |
| IPR003598 | 515 | 587 | SM00408 | Immunoglobulin subtype 2 | |
| IPR003961 | 601 | 687 | SM00060 | Fibronectin | |
| IPR003961 | 704 | 790 | SM00060 | Fibronectin | |
| IPR003961 | 806 | 891 | SM00060 | Fibronectin | |
| IPR003961 | 906 | 986 | SM00060 | Fibronectin | |
| ProfileScan | IPR007110 | 29 | 120 | PS50835 | Immunoglobulin-like |
| IPR007110 | 125 | 211 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 230 | 316 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 321 | 405 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 411 | 500 | PS50835 | Immunoglobulin-like | |
| IPR007110 | 502 | 596 | PS50835 | Immunoglobulin-like | |
| IPR003961 | 601 | 696 | PS50853 | Fibronectin | |
| IPR003961 | 703 | 801 | PS50853 | Fibronectin | |
| IPR003961 | 805 | 901 | PS50853 | Fibronectin | |
| IPR003961 | 906 | 995 | PS50853 | Fibronectin |
