Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01014
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Accession No
Product ID ORK01014
Clone name fj12036
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol NDC1
cDNA sequence DNA sequence (4516 bp)
Predicted protein sequence (676 aa)
Flexi ORF Clone FXC01014
Description Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48).
Features of the cloned cDNA sequence

Length: 4516 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 2485 bp
Genome contig ID gi89161185r_53903746
PolyA signal sequence
(AATAAA,-16)
+----*----+----*----+----*----+----
ATACTGGATTGGGTAGAAAAATAAATTGGCAATTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAATGGAACAGTTAATTGAAATATGTGTGTTTATAAGGTCAATTAT

Features of the protein sequence

Length: 676 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAX06732 0 100.0 transmembrane p...
Homo sapiens
Q9BTX1 0 100.0 Nucleoporin NDC...
Homo sapiens
AAH03082 0 99.8 Transmembrane p...
Homo sapiens
CAB89726 0 99.8 hypothetical pr...
Homo sapiens
XP_513417 0 98.9 hypothetical pr...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 27 IVASIVWSVLFLPICTTVFIIFS 49 PRIMARY 23
2 67 LYSSYVIFYFLLLSVVIIIISIF 89 PRIMARY 23
3 93 FYAVVPSIPCSRLALIGKIIHPQ 115 SECONDARY 23
4 117 LMHSFIHAAMGMVMAWCAAVITQ 139 PRIMARY 23
5 163 CLNEYHLFFLLTGAFMGYSYSLL 185 SECONDARY 23
6 210 SLLLLVKHSCVESLFLVRNFCIL 232 SECONDARY 23
7 267 LNLSLLYHVWLCGVFLLTTWYVS 289 PRIMARY 23
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