Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01314
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Accession No
Product ID ORK01314
Clone name hk03782
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol POLR2B
cDNA sequence DNA sequence (3795 bp)
Predicted protein sequence (1186 aa)
Flexi ORF Clone FXC01314
Description DNA-directed RNA polymerase II subunit RPB2 (EC (RNA polymerase II subunit B2) (DNA-directed RNA polymerase II subunit B) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide).
Features of the cloned cDNA sequence

Length: 3795 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 170 bp
Genome contig ID gi89161207f_57439809
PolyA signal sequence
Flanking genome sequence
(152274 - 152323)

Features of the protein sequence

Length: 1186 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001083325 0 100.0 DNA directed RN...
Macaca mulatta
P30876 0 100.0 DNA-directed RN...
Homo sapiens
XP_001916826 0 99.9 similar to DNA-...
Equus caballus
AAI42268 0 99.9 POLR2B protein ...
Bos taurus
Q8CFI7 0 99.9 DNA-directed RN...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR007644 50 463 PF04563 RNA polymerase
IPR007642 213 406 PF04561 RNA polymerase Rpb2
IPR007645 480 545 PF04565 RNA polymerase Rpb2
IPR007646 579 642 PF04566 RNA polymerase Rpb2
IPR007647 665 712 PF04567 RNA polymerase Rpb2
IPR007120 717 1092 PF00562 RNA polymerase Rpb2
IPR007641 1094 1186 PF04560 RNA polymerase Rpb2
ScanRegExp IPR007121 944 956 PS01166 RNA polymerase
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