ORK01491

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01491

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01491
Clone name	bm01922
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	SSTR2
cDNA sequence	DNA sequence (1408 bp) Predicted protein sequence (372 aa)
HaloTag ORF Clone	FHC01491
Flexi ORF Clone	FXC01491
Description	Somatostatin receptor type 2 (SS2R) (SRIF-1).

Features of the cloned cDNA sequence

Description

Length: 1408 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	149 bp
Genome contig ID	gi51511734f_68572966
PolyA signal sequence (None)	+--------+--------+----*----+---- TTGCTCAGCATGAGTCCAATTCAGAGAACGGTGTT
Flanking genome sequence (105348 - 105397)	----+--------+--------+--------+--------+----* TGAGTCAGCTTGTCTGATTGAATGATAATGTGCTAAATTGATTACCTCCC

Features of the protein sequence

Description

Length: 372 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
P30874	2.9e-150	100.0	Somatostatin re...	Homo sapiens
AAX36136	2.9e-150	100.0	somatostatin re...	synthetic construct
AAX37058	5.2e-150	99.7	somatostatin re...	synthetic construct
AAV38728	6.1e-150	99.7	somatostatin re...	synthetic construct
BAG36594	3.7e-149	99.1	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002074	11	28	PR00588	Somatostatin receptor
	IPR002074	29	48	PR00588	Somatostatin receptor
	IPR000586	45	57	PR00246	Somatostatin receptor
	IPR000276	48	72	PR00237	Rhodopsin-like GPCR superfamily
	IPR000276	81	102	PR00237	Rhodopsin-like GPCR superfamily
	IPR000586	100	108	PR00246	Somatostatin receptor
	IPR000586	119	128	PR00246	Somatostatin receptor
	IPR000276	125	147	PR00237	Rhodopsin-like GPCR superfamily
	IPR000276	161	182	PR00237	Rhodopsin-like GPCR superfamily
	IPR002074	183	198	PR00588	Somatostatin receptor
	IPR000276	212	235	PR00237	Rhodopsin-like GPCR superfamily
	IPR000586	236	245	PR00246	Somatostatin receptor
	IPR000586	246	259	PR00246	Somatostatin receptor
	IPR000276	257	281	PR00237	Rhodopsin-like GPCR superfamily
	IPR000586	279	287	PR00246	Somatostatin receptor
	IPR002074	280	299	PR00588	Somatostatin receptor
	IPR000276	297	323	PR00237	Rhodopsin-like GPCR superfamily
	IPR000586	317	329	PR00246	Somatostatin receptor
	IPR002074	335	352	PR00588	Somatostatin receptor
	IPR002074	353	371	PR00588	Somatostatin receptor
HMMPfam	IPR000276	63	315	PF00001	Rhodopsin-like GPCR superfamily
ProfileScan	IPR000276	63	315	PS50262	Rhodopsin-like GPCR superfamily
ScanRegExp	IPR000276	131	147	PS00237	Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	48	VLTFIYFVVCIIGLCGNTLVIYV	70	PRIMARY	23
	2	84	YILNLAIADELFMLGLPFLAMQV	106	SECONDARY	23
	3	118	CRVVMTVDGINQFTSIFCLTVMS	140	SECONDARY	23
	4	164	MITMAVWGVSLLVILPIMIYAGL	186	PRIMARY	23
	5	213	IYTFILGFLVPLTIICLCYLFII	235	PRIMARY	23
	6	261	VSIVVAVFIFCWLPFYIFNVSSV	283	PRIMARY	23
	7	296	MFDFVVVLTYANSCANPILYAFL	318	SECONDARY	23