Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01528
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Accession No
Product ID ORK01528
Clone name ef02335
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol S1PR1
cDNA sequence DNA sequence (2724 bp)
Predicted protein sequence (438 aa)
Flexi ORF Clone FXC01528
Description sphingosine-1-phosphate receptor 1
Features of the cloned cDNA sequence

Length: 2724 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : YES
Integrity of 3' end
Length of 3'UTR 1242 bp
Genome contig ID gi89161185f_101375073
PolyA signal sequence
(AATAAA,-25)		 
+----*----+----*----+----*----+----
TATTACAAAGAATAAAAATATATTACTGTCTCTTT
Flanking genome sequence
(104448 - 104497)		 
----+----*----+----*----+----*----+----*----+----*
AGTATGGTTTTCAGTGCAATTAAACCGAGAGATGTCTTGTTTTTTTAAAA

Features of the protein sequence

Length: 438 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
P21453 9.1e-150 100.0 Sphingosine 1-p...
 Homo sapiens
AAX29856 9.1e-150 100.0 endothelial dif...
 synthetic construct
AAX36974 9.1e-150 100.0 endothelial dif...
 synthetic construct
XP_513598 8.2e-149 99.4 endothelial dif...
 Pan troglodytes
AAA52336 4.2e-148 99.2 endothelial dif...
 Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000987 60 75 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR004061 76 88 PR01523 Sphingosine 1-phosphate receptor
IPR000987 89 105 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000276 103 127 PR00237 Rhodopsin-like GPCR superfamily
IPR000987 125 137 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000276 136 157 PR00237 Rhodopsin-like GPCR superfamily
IPR004061 154 163 PR01523 Sphingosine 1-phosphate receptor
IPR000987 164 174 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR004061 174 185 PR01523 Sphingosine 1-phosphate receptor
IPR000276 180 202 PR00237 Rhodopsin-like GPCR superfamily
IPR000987 201 217 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000276 215 236 PR00237 Rhodopsin-like GPCR superfamily
IPR004061 256 266 PR01523 Sphingosine 1-phosphate receptor
IPR000276 258 281 PR00237 Rhodopsin-like GPCR superfamily
IPR004061 277 286 PR01523 Sphingosine 1-phosphate receptor
IPR000987 287 305 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000276 310 334 PR00237 Rhodopsin-like GPCR superfamily
IPR004061 341 352 PR01523 Sphingosine 1-phosphate receptor
IPR000276 349 375 PR00237 Rhodopsin-like GPCR superfamily
IPR004061 370 380 PR01523 Sphingosine 1-phosphate receptor
IPR000987 381 400 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000987 401 417 PR00642 EDG-1 sphingosine 1-phosphate receptor
IPR000987 417 434 PR00642 EDG-1 sphingosine 1-phosphate receptor
HMMPfam IPR000276 118 367 PF00001 Rhodopsin-like GPCR superfamily
ProfileScan IPR000276 118 367 PS50262 Rhodopsin-like GPCR superfamily
ScanRegExp IPR000276 186 202 PS00237 Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 104 TSVVFILICCFIILENIFVLLTI 126 PRIMARY 23
2 176 REGSMFVALSASVFSLLAIAIER 198 PRIMARY 23
3 221 SACWVISLILGGLPIMGWNCISA 243 PRIMARY 23
4 261 FCTTVFTLLLLSIVILYCRIYSL 283 PRIMARY 23
5 311 LKTVIIVLSVFIACWAPLFILLL 333 PRIMARY 23
6 349 AEYFLVLAVLNSGTNPIIYTLTN 371 SECONDARY 23
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