ORK01708

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01708

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01708
Clone name	ha02002
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of th ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC20A2
cDNA sequence	DNA sequence (3739 bp) Predicted protein sequence (702 aa)
HaloTag ORF Clone	FHC01708
Flexi ORF Clone	FXC01708
Description	solute carrier family 20, member 2

Features of the cloned cDNA sequence

Description

Length: 3739 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1326 bp
Genome contig ID	gi51511724r_42293152
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- ACCATATTAAATTTATAATAAAAAATGCCCCTCAG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGTTTGCCTCTGAAGCCTTTTTCTCAATATTGACAATTTTTCTTTCAGA

Features of the protein sequence

Description

Length: 702 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG10551	100.0	solute carrier ...	synthetic construct
Q08357	99.8	Sodium-dependen...	Homo sapiens
BAG37311	99.6	unnamed protein...	Homo sapiens
XP_001098237	99.3	similar to solu...	Macaca mulatta
EAW63214	97.6	solute carrier ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001204	74	687	PF01384	Phosphate transporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	54	DEYLWMVILGFIIAFILAFSVGA	76	PRIMARY	23
	2	136	TLMAGEVSAMVGSAVWQLIASFL	158	SECONDARY	23
	3	196	SWFISPLLSGFMSGLLFVLIRIF	218	PRIMARY	23
	4	227	PNGLRALPVFYAATIAINVFSIM	249	SECONDARY	23
	5	261	PMWAIALISFGVALLFAFFVWLF	283	PRIMARY	23
	6	557	VSNAIGPLVALWLIYKQGGVTQE	579	SECONDARY	23
	7	587	LFYGGVGICTGLWVWGRRVIQTM	609	SECONDARY	23
	8	621	GFTIELASAFTVVIASNIGLPV	642	SECONDARY	22
	9	674	VAWFVTVPVAGLFSAAVMALLMY	696	PRIMARY	23