Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK01727
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | |
|---|---|
| Product ID | ORK01727 |
| Clone name | ha00950 |
| Vector information |
The cDNA fragment was inserted at the EcoRV-NotI site
of th ...
|
| Symbol | CAD |
| cDNA sequence | DNA sequence (6900 bp) Predicted protein sequence (2196 aa) |
|
HaloTag ORF Clone |
FHC01727
|
| Flexi ORF Clone | FXC01727 |
| Description | carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase |
Length: 6900 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: NO Warning for coding interruption : NO Integrity of 3' end
| Length of 3'UTR | 267 bp |
|---|---|
| Genome contig ID | gi89161199f_27193780 |
| PolyA signal sequence (AATAAA,-24) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (126379 - 126428) |
----+----*----+----*----+----*----+----*----+----* |
Length: 2196 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR001317 | 212 | 226 | PR00099 | Carbamoyl-phosphate synthase |
| IPR001317 | 248 | 262 | PR00099 | Carbamoyl-phosphate synthase | |
| IPR006220 | 251 | 260 | PR00097 | Anthranilate synthase component II/delta crystallin | |
| IPR011702 | 251 | 260 | PR00096 | Glutamine amidotransferase superfamily | |
| IPR006220 | 281 | 292 | PR00097 | Anthranilate synthase component II/delta crystallin | |
| IPR011702 | 281 | 292 | PR00096 | Glutamine amidotransferase superfamily | |
| IPR001317 | 281 | 297 | PR00099 | Carbamoyl-phosphate synthase | |
| IPR001317 | 298 | 315 | PR00099 | Carbamoyl-phosphate synthase | |
| IPR001317 | 323 | 334 | PR00099 | Carbamoyl-phosphate synthase | |
| IPR006220 | 366 | 379 | PR00097 | Anthranilate synthase component II/delta crystallin | |
| IPR011702 | 366 | 379 | PR00096 | Glutamine amidotransferase superfamily | |
| IPR005483 | 915 | 929 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 944 | 954 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 1058 | 1070 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 1094 | 1113 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 1128 | 1145 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 1183 | 1212 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR005483 | 1255 | 1273 | PR00098 | Carbamoyl-phosphate synthetase large chain | |
| IPR002082 | 1930 | 1952 | PR00101 | Aspartate carbamoyltransferase | |
| IPR006130 | 1940 | 1959 | PR00100 | Aspartate/ornithine carbamoyltransferase | |
| IPR002082 | 1968 | 1977 | PR00101 | Aspartate carbamoyltransferase | |
| IPR002082 | 2022 | 2039 | PR00101 | Aspartate carbamoyltransferase | |
| IPR006130 | 2023 | 2034 | PR00100 | Aspartate/ornithine carbamoyltransferase | |
| IPR002082 | 2113 | 2122 | PR00101 | Aspartate carbamoyltransferase | |
| IPR006130 | 2148 | 2157 | PR00100 | Aspartate/ornithine carbamoyltransferase | |
| IPR002082 | 2152 | 2157 | PR00101 | Aspartate carbamoyltransferase | |
| IPR006130 | 2158 | 2181 | PR00100 | Aspartate/ornithine carbamoyltransferase | |
| IPR002082 | 2174 | 2188 | PR00101 | Aspartate carbamoyltransferase | |
| HMMPfam | IPR002474 | 34 | 193 | PF00988 | Carbamoyl-phosphate synthase |
| IPR000991 | 213 | 390 | PF00117 | Glutamine amidotransferase class-I | |
| IPR005481 | 426 | 546 | PF00289 | Carbamoyl-phosphate synthetase large chain | |
| IPR005479 | 548 | 648 | PF02786 | Carbamoyl-phosphate synthase L chain | |
| IPR005479 | 649 | 716 | PF02786 | Carbamoyl-phosphate synthase L chain | |
| IPR005480 | 769 | 892 | PF02787 | Carbamoyl-phosphate synthetase large chain | |
| IPR005481 | 902 | 1016 | PF00289 | Carbamoyl-phosphate synthetase large chain | |
| IPR005479 | 1018 | 1239 | PF02786 | Carbamoyl-phosphate synthase L chain | |
| IPR011607 | 1298 | 1399 | PF02142 | MGS-like | |
| IPR006680 | 1433 | 1718 | PF01979 | Amidohydrolase 1 | |
| IPR006132 | 1895 | 2037 | PF02729 | Aspartate/ornithine carbamoyltransferase | |
| IPR006131 | 2041 | 2192 | PF00185 | Aspartate/ornithine carbamoyltransferase | |
| HMMTigr | IPR006274 | 36 | 393 | TIGR01368 | Carbamoyl-phosphate synthase |
| IPR006275 | 422 | 1411 | TIGR01369 | Carbamoyl-phosphate synthase | |
| IPR004722 | 1396 | 1768 | TIGR00857 | Dihydroorotase multifunctional complex type | |
| IPR002082 | 1895 | 2194 | TIGR00670 | Aspartate carbamoyltransferase | |
| ProfileScan | IPR011761 | 553 | 752 | PS50975 | ATP-grasp fold |
| IPR011761 | 1023 | 1214 | PS50975 | ATP-grasp fold | |
| ScanRegExp | IPR012998 | 281 | 292 | PS00442 | Glutamine amidotransferase |
| IPR005479 | 584 | 598 | PS00866 | Carbamoyl-phosphate synthase L chain | |
| IPR005479 | 651 | 658 | PS00867 | Carbamoyl-phosphate synthase L chain | |
| IPR005479 | 1054 | 1068 | PS00866 | Carbamoyl-phosphate synthase L chain | |
| IPR005479 | 1183 | 1190 | PS00867 | Carbamoyl-phosphate synthase L chain | |
| IPR002195 | 1440 | 1448 | PS00482 | Dihydroorotase | |
| IPR002195 | 1655 | 1666 | PS00483 | Dihydroorotase | |
| IPR006130 | 1940 | 1947 | PS00097 | Aspartate/ornithine carbamoyltransferase |
