Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK01835
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Accession No
Product ID ORK01835
Clone name fh12212
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol VCL
cDNA sequence DNA sequence (5348 bp)
Predicted protein sequence (1096 aa)
Flexi ORF Clone FXC01835
Description Vinculin (Metavinculin).
Features of the cloned cDNA sequence

Length: 5348 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1842 bp
Genome contig ID gi89161187f_75327667
PolyA signal sequence
Flanking genome sequence
(222110 - 222159)

Features of the protein sequence

Length: 1096 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAA61283 0 100.0 vinculin [Homo ...
Homo sapiens
AAH39174 0 99.9 Vinculin [Homo ...
Homo sapiens
AAX36196 0 99.9 vinculin [synth...
synthetic construct
XP_001918196 0 99.8 vinculin isofor...
Equus caballus
XP_001252035 0 99.5 similar to vinc...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR006077 886 896 PR00806 Vinculin/alpha-catenin
IPR006077 901 914 PR00806 Vinculin/alpha-catenin
IPR006077 947 964 PR00806 Vinculin/alpha-catenin
IPR006077 982 997 PR00806 Vinculin/alpha-catenin
IPR006077 997 1012 PR00806 Vinculin/alpha-catenin
IPR006077 1016 1037 PR00806 Vinculin/alpha-catenin
IPR006077 1053 1072 PR00806 Vinculin/alpha-catenin
HMMPfam IPR006077 33 1096 PF01044 Vinculin/alpha-catenin
ScanRegExp IPR000633 192 212 PS00663 Vinculin
IPR000633 307 317 PS00664 Vinculin
IPR000633 418 428 PS00664 Vinculin
IPR000633 527 537 PS00664 Vinculin
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