ORK01845

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01845

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01845
Clone name	fj00658
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	DERL2
cDNA sequence	DNA sequence (4147 bp) Predicted protein sequence (239 aa)
HaloTag ORF Clone	FHC01845
Flexi ORF Clone	FXC01845
Description	Derlin-2 (Degradation in endoplasmic reticulum protein 2) (Der1-like protein 2) (DERtrin-2) (F-LANa) (F-LAN-1).

Features of the cloned cDNA sequence

Description

Length: 4147 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Features of the protein sequence

Description

Length: 239 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9GZP9	3.5e-98	100.0	Derlin-2; Der1-...	Homo sapiens
XP_001504789	8.5e-98	99.5	similar to Der1...	Equus caballus
Q8BNI4	1.3e-97	98.7	Derlin-2; Der1-...	Mus musculus
AAL14868	4.4e-97	98.3	F-LANa [Mus mus...	Mus musculus
XP_001079920	5.1e-97	97.9	similar to Der1...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007599	13	203	PF04511	Der1-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	23	ACVLTTAAVQLELITPFQLYFNP	45	SECONDARY	23
	2	56	RLITNFLFFGPVGFNFLFNMIFL	78	SECONDARY	23
	3	103	FGGFLMTLFGLFVSLVFLGQAFT	125	PRIMARY	23
	4	162	SLLLGNSIIVDLLGIAVGHIYFF	184	PRIMARY	23