ORK01883

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01883

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01883
Clone name	bm02537
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ATL1
cDNA sequence	DNA sequence (2052 bp) Predicted protein sequence (569 aa)
HaloTag ORF Clone	FHC01883
Flexi ORF Clone	FXC01883
Description	Atlastin-1 (GTP-binding protein 3) (Guanine nucleotide-binding protein 3) (GBP-3) (Brain-specific GTP-binding protein).

Features of the cloned cDNA sequence

Description

Length: 2052 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	332 bp
Genome contig ID	gi51511730f_49996691
PolyA signal sequence (ATTAAA,-19)	+--------+--------+----*----+---- CTACTACTGGGTTATAATTAAATCATGTGATATTC
Flanking genome sequence (172450 - 172499)	----+--------+--------+--------+--------+----* CACGTTTGGATATGCTCATTTAATTTCTACAGAAAAAATTTTAAATTATT

Features of the protein sequence

Description

Length: 569 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8WXF7	100.0	Atlastin-1; Spa...	Homo sapiens
CAH93275	99.8	hypothetical pr...	Pongo abelii
Q60HD2	99.6	Atlastin-1.	Macaca fascicularis
XP_001155779	99.8	atlastin isofor...	Pan troglodytes
BAD97156	99.6	atlastin varian...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR015894	54	325	PF02263	Guanylate-binding protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	458	TPATLFVVIFITYVIAGVTGFIG	480	PRIMARY	23
SOSUI2	2	485	ASLCNMIMGLTLITLCTWAYIR	506	PRIMARY	22