ORK01889

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK01889

Order Kazusa clone(s) from :

Accession No
Product ID	ORK01889
Clone name	ha04794
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of th ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
Symbol	HEATR1
cDNA sequence	DNA sequence (6965 bp) Predicted protein sequence (2145 aa)
HaloTag ORF Clone	FHC01889
Flexi ORF Clone	FXC01889
Description	HEAT repeat-containing protein 1 (Protein BAP28).

Features of the cloned cDNA sequence

Description

Length: 6965 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	446 bp
Genome contig ID	gi89161185r_234680379
PolyA signal sequence (AAGAAA,-25)	+--------+--------+----*----+---- GCTCTATTTCAAGAAAATGAAGTTATTTAGCAATC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACAGAAGTACTTTTGACTGTAAAGCCTACTTTTCATTTTGGGTAGGCGA

Features of the protein sequence

Description

Length: 2145 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9H583	100.0	HEAT repeat-con...	Homo sapiens
EAW70063	99.9	HEAT repeat con...	Homo sapiens
AAI50615	99.7	HEAT repeat con...	Homo sapiens
XP_001156974	99.5	protein BAP28 i...	Pan troglodytes
XP_001157168	99.1	protein BAP28 i...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000357	237	273	PF02985	HEAT
	IPR000357	914	950	PF02985	HEAT
	IPR012954	1858	2011	PF08146	BP28
	IPR000357	2060	2096	PF02985	HEAT

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1372	NVEEIVVKIISVFVDALPHVPEH	1394	SECONDARY	23
SOSUI2	2	1412	FLWILLILLFEQYVTKTVLAAAY	1434	PRIMARY	23