Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK02116
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Accession No AB209198
Product ID ORK02116
Clone name fj03875
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol EDNRB
cDNA sequence DNA sequence (4277 bp)
Predicted protein sequence (459 aa)
Flexi ORF Clone FXC02116
Description Endothelin B receptor precursor (ET-B) (Endothelin receptor Non- selective type).
Features of the cloned cDNA sequence

Length: 4277 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 2711 bp
Genome contig ID gi51511729r_77267625
PolyA signal sequence
(ATTAAA,-21)
+----*----+----*----+----*----+----
TATGAAGTTATTCAATTAAAATGCCACATTTCTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TCTCTGGGCTGGACTGTGTGTTTCATTGTTGTGAAGAAACAGATATACAG

Features of the protein sequence

Length: 459 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92435 2.6e-185 100.0 endothelin rece...
Homo sapiens
CAH72430 5.9e-185 99.7 endothelin rece...
Homo sapiens
XP_509693 1.2e-184 99.5 endothelin rece...
Pan troglodytes
XP_001089047 3.9e-182 97.8 endothelin rece...
Macaca mulatta
AAD24541 2.7e-181 98.4 endothelin rece...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001112 19 37 PR00571 Endothelin B receptor
IPR001112 37 54 PR00571 Endothelin B receptor
IPR001112 55 71 PR00571 Endothelin B receptor
IPR001112 81 101 PR00571 Endothelin B receptor
IPR000499 107 126 PR00366 Endothelin receptor
IPR000276 120 144 PR00237 Rhodopsin-like GPCR superfamily
IPR000499 141 153 PR00366 Endothelin receptor
IPR000276 153 174 PR00237 Rhodopsin-like GPCR superfamily
IPR001112 183 194 PR00571 Endothelin B receptor
IPR000276 198 220 PR00237 Rhodopsin-like GPCR superfamily
IPR000499 222 238 PR00366 Endothelin receptor
IPR000276 234 255 PR00237 Rhodopsin-like GPCR superfamily
IPR000499 252 266 PR00366 Endothelin receptor
IPR001112 275 289 PR00571 Endothelin B receptor
IPR000499 282 300 PR00366 Endothelin receptor
IPR000276 291 314 PR00237 Rhodopsin-like GPCR superfamily
IPR000499 306 323 PR00366 Endothelin receptor
IPR000499 324 338 PR00366 Endothelin receptor
IPR000276 338 362 PR00237 Rhodopsin-like GPCR superfamily
IPR000276 385 411 PR00237 Rhodopsin-like GPCR superfamily
IPR001112 425 443 PR00571 Endothelin B receptor
IPR001112 444 458 PR00571 Endothelin B receptor
HMMPfam IPR000276 135 403 PF00001 Rhodopsin-like GPCR superfamily
ProfileScan IPR000276 135 403 PS50262 Rhodopsin-like GPCR superfamily
ScanRegExp IPR000276 204 220 PS00237 Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 22 PSLCGRALVALVLACGLSRIWGE 44 SECONDARY 23
2 117 FKYINTVVSCLVFVLGIIGNSTL 139 PRIMARY 23
3 156 LIASLALGDLLHIVIDIPINVYK 178 SECONDARY 23
4 191 CKLVPFIQKASVGITVLSLCALS 213 SECONDARY 23
5 238 EIVLIWVVSVVLAVPEAIGFDII 260 PRIMARY 23
6 294 LFSFYFCLPLAITAFFYTLMTCE 316 SECONDARY 23
7 342 VFCLVLVFALCWLPLHLSRILKL 364 PRIMARY 23
8 375 CELLSFLLVLDYIGINMASLNSC 397 SECONDARY 23
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