ORK02624

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK02624

Order Kazusa clone(s) from :

Accession No
Product ID	ORK02624
Clone name	bm08395
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	ZDHHC16
cDNA sequence	DNA sequence (1783 bp) Predicted protein sequence (386 aa)
HaloTag ORF Clone	FHC02624
Flexi ORF Clone	FXC02624
Description	zinc finger, DHHC-type containing 16

Features of the cloned cDNA sequence

Description

Length: 1783 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	478 bp
Genome contig ID	gi89161187f_99095935
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- GGGAGCACAAATAAAGGTATTCGATTTTTAAAGAT
Flanking genome sequence (111183 - 111232)	----+--------+--------+--------+--------+----* ATGTAGCTTCTCACTCTCTGCCTCACGATAGGGCAGGGAAGGGGAAAGTC

Features of the protein sequence

Description

Length: 386 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q969W1	1.8e-179	100.0	Probable palmit...	Homo sapiens
Q4R7E2	4.8e-179	99.7	Probable palmit...	Macaca fascicularis
XP_507961	6.6e-179	99.7	Abl-philin 2 is...	Pan troglodytes
XP_850068	1.5e-175	97.6	similar to Abl-...	Canis lupus fam...
XP_001928860	3.9e-175	97.6	similar to Abl-...	Sus scrofa

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001594	132	197	PD003041	Zinc finger
HMMPfam	IPR001594	157	219	PF01529	Zinc finger
ProfileScan	IPR001594	164	214	PS50216	Zinc finger

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	14	RSLLLGPARLCLRLLLLLGY	33	SECONDARY	20
	2	86	RWFGVVFVVLVIVLTGSIVAIAY	108	PRIMARY	23
	3	126	WHFFYSHWNLILIVFHYYQAIT	147	SECONDARY	22