ORK04862

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK04862

Order Kazusa clone(s) from :

Accession No	AB209820
Product ID	ORK04862
Clone name	bm04609
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	EI24
cDNA sequence	DNA sequence (1783 bp) Predicted protein sequence (185 aa)
Description	Etoposide-induced protein 2.4 (p53-induced protein 8).

Features of the cloned cDNA sequence

Description

Length: 1783 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	1026 bp
Genome contig ID	gi51511727f_124844536
PolyA signal sequence (None)	+--------+--------+----*----+---- CTCAGGTTAGGTTTTGGTCTCTCTTGCTCCACTGC
Flanking genome sequence (114800 - 114849)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCTGAAGAGATGAGAT

Features of the protein sequence

Description

Length: 185 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93057	1.1e-76	100.0	Etoposide-induc...	Homo sapiens
O14681	5.3e-76	99.4	Etoposide-induc...	Homo sapiens
AAC39531	1.1e-74	97.8	Pig8 [Homo sapi...	Homo sapiens
NP_001007278	4.1e-74	100.0	etoposide-induc...	Homo sapiens
XP_001147121	4.1e-74	100.0	etoposide induc...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR009890	16	185	PF07264	Etoposide-induced 2.4

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	85	GVFWFSLLLFYRVFIPVLQSVTA	107	PRIMARY	23
	2	124	EFFLTSIFSALWVLPLFVLSKVV	146	PRIMARY	23
	3	166	PHPFPSVSKIIADMLFNLLL	185	SECONDARY	20