ORK05026

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05026

Order Kazusa clone(s) from :

Accession No	AB209018
Product ID	ORK05026
Clone name	hj02840
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	FKBP11
cDNA sequence	DNA sequence (4977 bp) Predicted protein sequence (119 aa)
Description	FK506-binding protein 11 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (19 kDa FK506-binding protein) (FKBP-19).

Features of the cloned cDNA sequence

Description

Length: 4977 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	484 bp
Genome contig ID	gi89161190r_47501583
PolyA signal sequence (AAGAAA,-13)	+--------+--------+----*----+---- TCAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAT
Flanking genome sequence (67464 - 67415)	----+--------+--------+--------+--------+----* AAAACACTCATATACAGTAGCCCCTTCTTATCCGTGGTCTTGTTTTCCAT

Features of the protein sequence

Description

Length: 119 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92255	2.6e-48	100.0	FK506 binding p...	Homo sapiens
Q9NYL4	1.1e-25	96.1	Peptidyl-prolyl...	Homo sapiens
XP_001159891	1.1e-25	96.1	similar to FK50...	Pan troglodytes
XP_001104575	2.6e-25	94.8	similar to FK50...	Macaca mulatta
XP_001504182	3e-24	90.9	similar to FK50...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	5	PHLNLVSFIVVGFAVAYAPYF	25	PRIMARY	21
SOSUI2	2	71	VKGILPLVGMAMVPALLGLIGYH	93	PRIMARY	23