ORK05345

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK05345

Order Kazusa clone(s) from :

Accession No	AB209836
Product ID	ORK05345
Clone name	bm05568
Vector information	The cDNA fragment was inserted at the XhoI-SacI site of the ... The cDNA fragment was inserted at the XhoI-SacI site of the pBC SK+ vector (Cm resistance; http://www.kazusa.or.jp/huge/vectorinfo/pbcskp_s.txt) with sequences including attB1 and attB2 sites (CTCGAGCAGCTGAAGCTTTCACAAGTTTGTAC AAAAAAGCAGGCTCTTC-5' end of cDNA, GAGCTCTCACCACTTTGTAC AAGAAAGCTGGGCGGCCGCTTTTTTTTTTTTTTTTTT-3' end of cDNA).
Symbol	GPR162
cDNA sequence	DNA sequence (1923 bp) Predicted protein sequence (568 aa)
Description	Probable G-protein coupled receptor 162 (Gene-rich cluster gene A protein).

Features of the cloned cDNA sequence

Description

Length: 1923 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	214 bp
Genome contig ID	gi89161190f_6703384
PolyA signal sequence (ATTAAA,-25)	+--------+--------+----*----+---- AGCAATATGTATTAAAGTCTGAAGTGTTGCCATGG
Flanking genome sequence (103462 - 103511)	----+--------+--------+--------+--------+----* AAACCTCAGTGTCCAGTGTACTGCGGTGGAAAGGGGCTTGGAGGGTGGAG

Features of the protein sequence

Description

Length: 568 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93073	0	100.0	gene rich clust...	Homo sapiens
Q16538	0	100.0	Probable G-prot...	Homo sapiens
XP_001915705	4.1e-213	96.4	similar to G pr...	Equus caballus
AAI19847	3.2e-212	95.5	G protein-coupl...	Bos taurus
XP_867478	7.1e-212	96.1	similar to G pr...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000276	10	305	PF00001	Rhodopsin-like GPCR superfamily
ProfileScan	IPR000276	10	260	PS50262	Rhodopsin-like GPCR superfamily

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	LACGLLALLANAWIILSISA	20	PRIMARY	20
	2	31	LLCFLAGTHILMAAVPLTTFAVV	53	SECONDARY	23
	3	69	ICKVFVSTYYTLALATCFTVAS	90	SECONDARY	22
	4	113	QALHAVMGIWMVSFILSTLPSIG	135	PRIMARY	23
	5	155	IGLGFGVCFSLLLLGGIVMGLVC	177	PRIMARY	23
	6	251	NLVSAIVFLYDSLTGVPILVVSF	273	PRIMARY	23
	7	284	WMVLAVLWCSMAQTLLLPSFIWS	306	PRIMARY	23