Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for
ORK05800
Order Kazusa clone(s) from : 
Japan
||
Other countries |
| Accession No | AB208922 |
|---|---|
| Product ID | ORK05800 |
| Clone name | ae00022 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of
the ...
|
| Symbol | LAMA2 |
| cDNA sequence | DNA sequence (5777 bp) Predicted protein sequence (1853 aa) |
| Description | Laminin subunit alpha-2 precursor (Laminin M chain) (Merosin heavy chain). |
Length: 5777 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. Warning for N-terminal truncation: YES Warning for coding interruption : YES Integrity of 3' end
| Length of 3'UTR | 213 bp |
|---|---|
| Genome contig ID | gi89161210f_129578658 |
| PolyA signal sequence (ATTAAA,-22) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (300745 - 300794) |
----+----*----+----*----+----*----+----*----+----* |
Length: 1853 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| BlastProDom | IPR000034 | 1 | 63 | PD003031 | Laminin B |
| NULL | 693 | 879 | PD031131 | NULL | |
| FPrintScan | IPR002049 | 108 | 126 | PR00011 | EGF-like |
| IPR002049 | 245 | 273 | PR00011 | EGF-like | |
| IPR002049 | 274 | 292 | PR00011 | EGF-like | |
| HMMPfam | IPR000034 | 1 | 113 | PF00052 | Laminin B |
| IPR002049 | 115 | 152 | PF00053 | EGF-like | |
| IPR002049 | 155 | 201 | PF00053 | EGF-like | |
| IPR002049 | 204 | 259 | PF00053 | EGF-like | |
| IPR002049 | 262 | 297 | PF00053 | EGF-like | |
| IPR009254 | 323 | 588 | PF06008 | Laminin I | |
| IPR010307 | 772 | 908 | PF06009 | Laminin II | |
| IPR012679 | 909 | 1049 | PF00054 | Laminin G | |
| IPR012679 | 1103 | 1238 | PF00054 | Laminin G | |
| IPR012679 | 1285 | 1426 | PF00054 | Laminin G | |
| IPR012679 | 1524 | 1652 | PF00054 | Laminin G | |
| IPR012680 | 1699 | 1827 | PF02210 | Laminin G | |
| HMMSmart | IPR000034 | 1 | 99 | SM00281 | Laminin B |
| IPR002049 | 115 | 152 | SM00180 | EGF-like | |
| IPR002049 | 155 | 201 | SM00180 | EGF-like | |
| IPR002049 | 204 | 259 | SM00180 | EGF-like | |
| IPR002049 | 262 | 306 | SM00180 | EGF-like | |
| IPR001791 | 901 | 1046 | SM00282 | Laminin G | |
| IPR001791 | 1095 | 1235 | SM00282 | Laminin G | |
| IPR001791 | 1277 | 1423 | SM00282 | Laminin G | |
| IPR001791 | 1516 | 1649 | SM00282 | Laminin G | |
| IPR001791 | 1691 | 1827 | SM00282 | Laminin G | |
| ProfileScan | IPR000034 | 1 | 114 | PS51115 | Laminin B |
| IPR002049 | 155 | 203 | PS50027 | EGF-like | |
| IPR002049 | 204 | 261 | PS50027 | EGF-like | |
| IPR002049 | 262 | 308 | PS50027 | EGF-like | |
| IPR001791 | 880 | 1063 | PS50025 | Laminin G | |
| IPR001791 | 1075 | 1252 | PS50025 | Laminin G | |
| IPR001791 | 1257 | 1441 | PS50025 | Laminin G | |
| IPR001791 | 1494 | 1665 | PS50025 | Laminin G | |
| IPR001791 | 1670 | 1850 | PS50025 | Laminin G | |
| ScanRegExp | IPR013032 | 115 | 126 | PS00022 | EGF-like region |
| IPR013032 | 115 | 129 | PS01186 | EGF-like region | |
| IPR002049 | 171 | 206 | PS01248 | EGF-like | |
| IPR002049 | 229 | 264 | PS01248 | EGF-like | |
| IPR013032 | 281 | 292 | PS00022 | EGF-like region |
