Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05822
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Accession No AB209408
Product ID ORK05822
Clone name fh24387
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol LGI1
cDNA sequence DNA sequence (5985 bp)
Predicted protein sequence (394 aa)
Description Leucine-rich glioma-inactivated protein 1 precursor (Epitempin-1).
Features of the cloned cDNA sequence

Length: 5985 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 355 bp
Genome contig ID gi89161187f_95438072
PolyA signal sequence
Flanking genome sequence
(109835 - 109884)

Features of the protein sequence

Length: 394 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92645 6.8e-174 100.0 leucine-rich, g...
Homo sapiens
EAW50051 4.1e-172 99.2 leucine-rich, g...
Homo sapiens
O95970 4.6e-172 99.2 Leucine-rich gl...
Homo sapiens
Q1EGL2 1.6e-171 98.9 Leucine-rich gl...
Pan troglodytes
Q5R945 2.6e-171 98.9 Leucine-rich gl...
Pongo abelii
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000483 34 59 PF01463 Cysteine-rich flanking region
IPR005492 63 103 PF03736 EPTP
IPR005492 257 298 PF03736 EPTP
HMMSmart IPR000483 10 59 SM00082 Cysteine-rich flanking region
ProfileScan IPR009039 61 104 PS50912 EAR
IPR009039 107 150 PS50912 EAR
IPR009039 153 201 PS50912 EAR
IPR009039 202 252 PS50912 EAR
IPR009039 255 299 PS50912 EAR
IPR009039 300 343 PS50912 EAR
IPR009039 346 389 PS50912 EAR
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