Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK05872
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Accession No AB209683
Product ID ORK05872
Clone name pf08020
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
Symbol LRP6
cDNA sequence DNA sequence (7811 bp)
Predicted protein sequence (1477 aa)
Description Low-density lipoprotein receptor-related protein 6 precursor.
Features of the cloned cDNA sequence

Length: 7811 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 3375 bp
Genome contig ID gi89161190r_12060230
PolyA signal sequence
(AATAAA,-19)		 
+----*----+----*----+----*----+----
GAAATTTGATTTTTGTAATAAAACAGTGGAAAAGT
Flanking genome sequence
(100000 - 99951)		 
----+----*----+----*----+----*----+----*----+----*
AAAAGTGTCTGTCCTTTCTTTTCAGCAAGAAATTAAGACAGTAGCTGGTT

Features of the protein sequence

Length: 1477 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD92920 0 100.0 low density lip...
 Homo sapiens
O75581 0 100.0 Low-density lip...
 Homo sapiens
AAI17137 0 99.9 Low density lip...
 Homo sapiens
XP_001152103 0 99.7 low density lip...
 Pan troglodytes
XP_534886 0 99.1 similar to low ...
 Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR002172 1125 1146 PR00261 Low density lipoprotein-receptor
IPR002172 1162 1183 PR00261 Low density lipoprotein-receptor
IPR002172 1200 1221 PR00261 Low density lipoprotein-receptor
HMMPfam IPR000033 14 56 PF00058 Low-density lipoprotein receptor
IPR000033 58 99 PF00058 Low-density lipoprotein receptor
IPR000033 101 140 PF00058 Low-density lipoprotein receptor
IPR006209 150 187 PF00008 EGF-like
IPR000033 236 277 PF00058 Low-density lipoprotein receptor
IPR000033 279 320 PF00058 Low-density lipoprotein receptor
IPR000033 322 364 PF00058 Low-density lipoprotein receptor
IPR000033 366 404 PF00058 Low-density lipoprotein receptor
IPR000033 407 450 PF00058 Low-density lipoprotein receptor
IPR006209 456 491 PF00008 EGF-like
IPR000033 538 579 PF00058 Low-density lipoprotein receptor
IPR000033 581 622 PF00058 Low-density lipoprotein receptor
IPR000033 624 665 PF00058 Low-density lipoprotein receptor
IPR000033 667 704 PF00058 Low-density lipoprotein receptor
IPR000033 707 748 PF00058 Low-density lipoprotein receptor
IPR006209 757 793 PF00008 EGF-like
IPR000033 841 888 PF00058 Low-density lipoprotein receptor
IPR000033 890 931 PF00058 Low-density lipoprotein receptor
IPR000033 933 976 PF00058 Low-density lipoprotein receptor
IPR000033 978 1019 PF00058 Low-density lipoprotein receptor
IPR000033 1021 1061 PF00058 Low-density lipoprotein receptor
IPR006209 1071 1107 PF00008 EGF-like
IPR002172 1111 1149 PF00057 Low density lipoprotein-receptor
IPR002172 1150 1186 PF00057 Low density lipoprotein-receptor
IPR002172 1188 1224 PF00057 Low density lipoprotein-receptor
HMMSmart IPR000033 1 37 SM00135 Low-density lipoprotein receptor
IPR000033 38 80 SM00135 Low-density lipoprotein receptor
IPR000033 81 122 SM00135 Low-density lipoprotein receptor
IPR006210 149 188 SM00181 EGF
IPR000033 216 258 SM00135 Low-density lipoprotein receptor
IPR000033 259 301 SM00135 Low-density lipoprotein receptor
IPR000033 302 345 SM00135 Low-density lipoprotein receptor
IPR000033 346 388 SM00135 Low-density lipoprotein receptor
IPR000033 389 429 SM00135 Low-density lipoprotein receptor
IPR006210 455 492 SM00181 EGF
IPR000033 518 560 SM00135 Low-density lipoprotein receptor
IPR000033 561 603 SM00135 Low-density lipoprotein receptor
IPR000033 604 647 SM00135 Low-density lipoprotein receptor
IPR000033 648 689 SM00135 Low-density lipoprotein receptor
IPR000033 691 729 SM00135 Low-density lipoprotein receptor
IPR006210 756 794 SM00181 EGF
IPR000033 821 863 SM00135 Low-density lipoprotein receptor
IPR000033 865 912 SM00135 Low-density lipoprotein receptor
IPR000033 913 957 SM00135 Low-density lipoprotein receptor
IPR000033 958 1000 SM00135 Low-density lipoprotein receptor
IPR000033 1001 1041 SM00135 Low-density lipoprotein receptor
IPR006210 1070 1114 SM00181 EGF
IPR002172 1112 1151 SM00192 Low density lipoprotein-receptor
IPR002172 1152 1188 SM00192 Low density lipoprotein-receptor
IPR002172 1189 1226 SM00192 Low density lipoprotein-receptor
ProfileScan IPR000033 1 13 PS51120 Low-density lipoprotein receptor
IPR000033 14 57 PS51120 Low-density lipoprotein receptor
IPR000033 58 100 PS51120 Low-density lipoprotein receptor
IPR000033 236 278 PS51120 Low-density lipoprotein receptor
IPR000033 279 321 PS51120 Low-density lipoprotein receptor
IPR000033 322 365 PS51120 Low-density lipoprotein receptor
IPR000033 366 408 PS51120 Low-density lipoprotein receptor
IPR000033 409 448 PS51120 Low-density lipoprotein receptor
IPR000033 538 580 PS51120 Low-density lipoprotein receptor
IPR000033 581 623 PS51120 Low-density lipoprotein receptor
IPR000033 624 666 PS51120 Low-density lipoprotein receptor
IPR000033 667 703 PS51120 Low-density lipoprotein receptor
IPR000033 707 749 PS51120 Low-density lipoprotein receptor
IPR000033 841 889 PS51120 Low-density lipoprotein receptor
IPR000033 890 932 PS51120 Low-density lipoprotein receptor
IPR000033 933 977 PS51120 Low-density lipoprotein receptor
IPR000033 978 1020 PS51120 Low-density lipoprotein receptor
IPR000033 1021 1062 PS51120 Low-density lipoprotein receptor
IPR002172 1112 1150 PS50068 Low density lipoprotein-receptor
IPR002172 1151 1187 PS50068 Low density lipoprotein-receptor
IPR002172 1189 1225 PS50068 Low density lipoprotein-receptor
ScanRegExp IPR013032 476 491 PS01186 EGF-like region
IPR002172 1127 1152 PS01209 Low density lipoprotein-receptor
IPR002172 1164 1186 PS01209 Low density lipoprotein-receptor
IPR002172 1202 1224 PS01209 Low density lipoprotein-receptor

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1238 VGSVIGVIVTIFVSGTVYFICQR 1260 PRIMARY 23
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