ORK06733

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK06733

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Accession No	AB209436
Product ID	ORK06733
Clone name	pj00962
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SCARB1
cDNA sequence	DNA sequence (4391 bp) Predicted protein sequence (581 aa)
Description	Scavenger receptor class B member 1 (SRB1) (SR-BI) (CD36 antigen-like 1) (CD36 and LIMPII analogous 1) (CLA-1) (Collagen type I receptor, thrombospondin receptor-like 1).

Features of the cloned cDNA sequence

Description

Length: 4391 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: YES

Warning for coding interruption : NO

Integrity of 3' end

Length of 3'UTR	2645 bp
Genome contig ID	gi89161190r_123734322
PolyA signal sequence (None)	+--------+--------+----*----+---- GGCCTTATCAGTTTTTATGTAATTTGTCCTGATTT
Flanking genome sequence (99630 - 99581)	----+--------+--------+--------+--------+----* AAAAAAAAAAAATCACATGCGGGTAAACTCAACATATTTTAATTTCTCTT

Features of the protein sequence

Description

Length: 581 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD92673	100.0	Scavenger recep...	Homo sapiens
BAG65493	100.0	unnamed protein...	Homo sapiens
AAP36785	99.8	scavenger recep...	synthetic construct
Q8WTV0	100.0	Scavenger recep...	Homo sapiens
BAG54008	100.0	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002159	86	107	PR01609	CD36 antigen
	IPR005428	96	118	PR01610	Adhesion molecule CD36
	IPR002159	111	123	PR01609	CD36 antigen
	IPR002159	138	157	PR01609	CD36 antigen
	IPR005428	226	242	PR01610	Adhesion molecule CD36
	IPR002159	279	303	PR01609	CD36 antigen
	IPR002159	351	375	PR01609	CD36 antigen
	IPR005428	375	393	PR01610	Adhesion molecule CD36
	IPR002159	398	419	PR01609	CD36 antigen
	IPR005428	465	487	PR01610	Adhesion molecule CD36
HMMPfam	IPR002159	33	473	PF01130	CD36 antigen

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	42	LGVAGLLCAVLGAVMIVMVPSLI	64	PRIMARY	23
	2	76	PSSLSFNMWKEIPIPFYLSVYFF	98	SECONDARY	23
	3	466	PKVMHYAQYVLLALGCVLLLVPV	488	PRIMARY	23