Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK06909
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Accession No AB209775
Product ID ORK06909
Clone name bm01791
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol SMPD1
cDNA sequence DNA sequence (2452 bp)
Predicted protein sequence (664 aa)
Description Sphingomyelin phosphodiesterase precursor (EC (Acid sphingomyelinase) (aSMase).
Features of the cloned cDNA sequence

Length: 2452 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: NO
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 388 bp
Genome contig ID gi51511727f_6268237
PolyA signal sequence
Flanking genome sequence
(104566 - 104615)

Features of the protein sequence

Length: 664 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD93012 0 100.0 sphingomyelin p...
Homo sapiens
EAW68728 0 99.8 sphingomyelin p...
Homo sapiens
AAA75008 0 99.6 acid sphingomye...
Homo sapiens
P17405 0 99.3 Sphingomyelin p...
Homo sapiens
AAA58377 0 99.2 acid sphingomye...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004843 234 496 PF00149 Metallophosphoesterase
HMMSmart IPR008139 122 200 SM00741 Saposin B
ProfileScan IPR008139 120 204 PS50015 Saposin B

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
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