Kazusa Clone (Original Type)
Gene/Protein Characteristic Table for ORK07019
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Accession No
Product ID ORK07019
Clone name bm01714
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
Symbol STX12
cDNA sequence DNA sequence (2326 bp)
Predicted protein sequence (294 aa)
Flexi ORF Clone FXC07019
Description syntaxin 12
Features of the cloned cDNA sequence

Length: 2326 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.
Warning for N-terminal truncation: YES
Warning for coding interruption : NO
Integrity of 3' end
Length of 3'UTR 1439 bp
Genome contig ID gi89161185f_27872350
PolyA signal sequence
Flanking genome sequence
(150518 - 150567)

Features of the protein sequence

Length: 294 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q86Y82 1.6e-87 100.0 Syntaxin-12.
Homo sapiens
Q5RBW6 1.2e-86 98.9 Syntaxin-12.
Pongo abelii
XP_001150085 1.2e-86 98.9 syntaxin 12 iso...
Pan troglodytes
XP_001112101 2.5e-86 98.5 similar to synt...
Macaca mulatta
CAA22911 9.8e-85 100.0 hypothetical pr...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR006011 36 132 PF00804 Syntaxin
IPR000727 201 263 PF05739 Target SNARE coiled-coil region
HMMSmart IPR006011 32 147 SM00503 Syntaxin
IPR000727 191 258 SM00397 Target SNARE coiled-coil region
ProfileScan IPR000727 196 258 PS50192 Target SNARE coiled-coil region
ScanRegExp IPR006012 202 241 PS00914 Syntaxin/epimorphin coiled-coil

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
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