ORK07540

Kazusa Clone (Original Type)

Gene/Protein Characteristic Table for ORK07540

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Accession No	AB208936
Product ID	ORK07540
Clone name	ah03430
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
Symbol	SLC26A6
cDNA sequence	DNA sequence (5682 bp) Predicted protein sequence (344 aa)
Description	Homo sapiens mRNA for Solute carrier family 26 member 6 variant protein.

Features of the cloned cDNA sequence

Description

Length: 5682 bp

Physical map

Restriction map

Prediction of protein coding region (GeneMark analysis) for : cloned DNA seq.

Warning for N-terminal truncation: NO

Warning for coding interruption : YES

Integrity of 3' end

Length of 3'UTR	1825 bp
Genome contig ID	gi89161205r_48538162
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- ATATTTTAGCCTCAGGAATAAAGATTTGTCTGCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACTCCAGTCTCTGCTGTGGCTTGGTGGGGCCCTGGTGGTGGGTGGTCCA

Features of the protein sequence

Description

Length: 344 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD92173	1.1e-126	100.0	Solute carrier ...	Homo sapiens
EAW64909	5.3e-67	88.6	solute carrier ...	Homo sapiens
EAW64904	5.9e-67	88.6	solute carrier ...	Homo sapiens
EAW64913	7e-67	88.8	solute carrier ...	Homo sapiens
EAW64905	7.3e-67	84.9	solute carrier ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011547	39	217	PF00916	Sulphate transporter

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	53	LVGSAFTIAVVGFAIAISLGKIF	75	PRIMARY	23
	2	88	ELVALGLSNLIGGIFQCFPVSCS	110	SECONDARY	23
	3	124	SQVAGAISSLFILLIIVKLGELF	146	PRIMARY	23
	4	190	FTATILLNLDLGLVVAVIFSLLL	212	PRIMARY	23